Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 GSTA8P-201ENST00000404253 637 ntBASIC7.41□□□□□ -1.22
LIG3P49916 Y_RNA.599-201ENST00000410489 109 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.41□□□□□ -1.22
LIG3P49916 TEX41-202ENST00000414256 604 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC7.41□□□□□ -1.22
LIG3P49916 AC009413.1-201ENST00000414823 399 ntBASIC7.41□□□□□ -1.22
LIG3P49916 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC7.41□□□□□ -1.22
LIG3P49916 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 RPS26P13-201ENST00000419030 330 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AL390840.1-201ENST00000420303 988 ntBASIC7.41□□□□□ -1.22
LIG3P49916 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 RPS3AP44-201ENST00000425466 790 ntBASIC7.41□□□□□ -1.22
LIG3P49916 PRELID3BP10-201ENST00000431957 584 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 PSMD8P1-201ENST00000436275 769 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 FUNDC2P2-202ENST00000443452 493 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 AC234781.3-201ENST00000452540 973 ntBASIC7.41□□□□□ -1.22
LIG3P49916 USP9YP10-201ENST00000454868 628 ntBASIC7.41□□□□□ -1.22
LIG3P49916 ANKRD26P4-201ENST00000455755 950 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 AC084878.1-201ENST00000480555 648 ntBASIC7.41□□□□□ -1.22
LIG3P49916 RN7SL152P-201ENST00000484176 298 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 USP9YP5-201ENST00000511770 630 ntBASIC7.41□□□□□ -1.22
LIG3P49916 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC7.41□□□□□ -1.22
LIG3P49916 RN7SKP242-201ENST00000515967 289 ntBASIC7.41□□□□□ -1.22
LIG3P49916 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 HNRNPCP8-201ENST00000528764 888 ntBASIC7.41□□□□□ -1.22
LIG3P49916 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC7.41□□□□□ -1.22
LIG3P49916 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC7.41□□□□□ -1.22
LIG3P49916 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 AP003392.5-201ENST00000607857 415 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC7.41□□□□□ -1.22
LIG3P49916 AL450489.1-201ENST00000612071 468 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AL162574.1-201ENST00000615702 950 ntBASIC7.41□□□□□ -1.22
LIG3P49916 AC073488.7-201ENST00000633785 778 ntBASIC7.41□□□□□ -1.22
LIG3P49916 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 SGO1P1-201ENST00000603525 1447 ntBASIC7.41□□□□□ -1.22
LIG3P49916 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 AC009135.2-201ENST00000624136 1768 ntBASIC7.41□□□□□ -1.22
LIG3P49916 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC7.41□□□□□ -1.22
LIG3P49916 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC7.41□□□□□ -1.22
LIG3P49916 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIG3P49916 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
LIG3P49916 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
LIG3P49916 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
LIG3P49916 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
LIG3P49916 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC7.4□□□□□ -1.22
LIG3P49916 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIG3P49916 OR4D1-201ENST00000268912 1024 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
LIG3P49916 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC7.4□□□□□ -1.22
LIG3P49916 RNU6-192P-201ENST00000391253 100 ntBASIC7.4□□□□□ -1.22
LIG3P49916 TYMSP1-201ENST00000407851 869 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 ETF1P3-201ENST00000430422 1160 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AL138878.2-201ENST00000440581 1241 ntBASIC7.4□□□□□ -1.22
LIG3P49916 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC7.4□□□□□ -1.22
LIG3P49916 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC7.4□□□□□ -1.22
LIG3P49916 RN7SL180P-201ENST00000466769 294 ntBASIC7.4□□□□□ -1.22
LIG3P49916 MTND3P7-201ENST00000474435 343 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC108734.3-201ENST00000481241 1165 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC7.4□□□□□ -1.22
LIG3P49916 AC010409.2-201ENST00000505780 478 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC008496.1-201ENST00000509131 295 ntBASIC7.4□□□□□ -1.22
LIG3P49916 MTCO3P7-201ENST00000510008 774 ntBASIC7.4□□□□□ -1.22
LIG3P49916 OR51A1P-201ENST00000511110 946 ntBASIC7.4□□□□□ -1.22
LIG3P49916 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 MTCO1P49-201ENST00000523429 802 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC7.4□□□□□ -1.22
LIG3P49916 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 ERP27-202ENST00000540097 993 ntTSL 2 BASIC7.4□□□□□ -1.22
LIG3P49916 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC7.4□□□□□ -1.22
LIG3P49916 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC7.4□□□□□ -1.22
LIG3P49916 AC138749.2-201ENST00000566048 167 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 AC105275.2-201ENST00000567907 711 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC024614.1-201ENST00000577546 307 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC068790.6-201ENST00000602558 258 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AP001554.1-201ENST00000604533 376 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AL683813.2-201ENST00000605245 502 ntBASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms