Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.94□□□□□ -1.46
SHMT2P34897 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.94□□□□□ -1.46
SHMT2P34897 RPL7L1P3-201ENST00000455249 689 ntBASIC5.94□□□□□ -1.46
SHMT2P34897 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.94□□□□□ -1.46
SHMT2P34897 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.94□□□□□ -1.46
SHMT2P34897 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.94□□□□□ -1.46
SHMT2P34897 RN7SKP35-201ENST00000517210 151 ntBASIC5.94□□□□□ -1.46
SHMT2P34897 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.94□□□□□ -1.46
SHMT2P34897 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
SHMT2P34897 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.94□□□□□ -1.46
SHMT2P34897 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.94□□□□□ -1.46
SHMT2P34897 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
SHMT2P34897 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 AC004801.6-201ENST00000616571 978 ntBASIC5.94□□□□□ -1.46
SHMT2P34897 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.94□□□□□ -1.46
SHMT2P34897 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.94□□□□□ -1.46
SHMT2P34897 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.94□□□□□ -1.46
SHMT2P34897 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SHMT2P34897 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.94□□□□□ -1.46
SHMT2P34897 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SHMT2P34897 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
SHMT2P34897 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 MTCO1P28-201ENST00000574177 1528 ntBASIC5.94□□□□□ -1.46
SHMT2P34897 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SHMT2P34897 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
SHMT2P34897 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
SHMT2P34897 IFIT1P1-201ENST00000400497 1449 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC093225.1-201ENST00000506867 1408 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.93□□□□□ -1.46
SHMT2P34897 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 RNA5SP433-201ENST00000364491 114 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 SEPT7P2-202ENST00000398921 823 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AL121835.1-201ENST00000404250 354 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.93□□□□□ -1.46
SHMT2P34897 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.93□□□□□ -1.46
SHMT2P34897 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.93□□□□□ -1.46
SHMT2P34897 AC023141.3-201ENST00000436698 278 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AL353662.1-201ENST00000439099 327 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 RPL23AP60-201ENST00000450011 454 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 RAB28P2-201ENST00000454299 641 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 Z83838.1-202ENST00000456225 839 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AL445687.2-201ENST00000458156 728 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC073594.1-201ENST00000462065 364 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC098847.1-201ENST00000473094 348 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.93□□□□□ -1.46
SHMT2P34897 RBBP4P1-201ENST00000502424 1276 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.93□□□□□ -1.46
SHMT2P34897 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.93□□□□□ -1.46
SHMT2P34897 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
SHMT2P34897 AC090651.1-201ENST00000567865 634 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC020916.2-201ENST00000591242 360 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.93□□□□□ -1.46
SHMT2P34897 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.93□□□□□ -1.46
SHMT2P34897 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.93□□□□□ -1.46
SHMT2P34897 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.93□□□□□ -1.46
SHMT2P34897 AC016590.3-201ENST00000611171 753 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 MIR6071-201ENST00000616741 78 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AL157762.1-201ENST00000619612 415 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC025262.3-201ENST00000623666 360 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.93□□□□□ -1.46
SHMT2P34897 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.93□□□□□ -1.46
SHMT2P34897 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
SHMT2P34897 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
SHMT2P34897 WDR95P-201ENST00000425638 1542 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.93□□□□□ -1.46
SHMT2P34897 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 AC024587.1-201ENST00000505925 2157 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SHMT2P34897 USP9YP3-201ENST00000434481 1766 ntBASIC5.93□□□□□ -1.46
SHMT2P34897 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.93□□□□□ -1.46
SHMT2P34897 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
SHMT2P34897 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 AL121768.1-201ENST00000613917 2544 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.92□□□□□ -1.46
SHMT2P34897 RPS15AP30-201ENST00000420976 390 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.92□□□□□ -1.46
SHMT2P34897 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 FTLP8-201ENST00000446770 267 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms