Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.09□□□□□ -1.43
MSH3P20585 AC099535.1-201ENST00000408928 371 ntBASIC6.09□□□□□ -1.43
MSH3P20585 RN7SKP151-201ENST00000410230 316 ntBASIC6.09□□□□□ -1.43
MSH3P20585 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 AC130360.1-201ENST00000425489 1117 ntBASIC6.09□□□□□ -1.43
MSH3P20585 RPL34P27-201ENST00000428810 349 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.09□□□□□ -1.43
MSH3P20585 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 AL390879.1-201ENST00000439143 386 ntBASIC6.09□□□□□ -1.43
MSH3P20585 OR52I1-201ENST00000450052 1050 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC6.09□□□□□ -1.43
MSH3P20585 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.09□□□□□ -1.43
MSH3P20585 CYP4F27P-201ENST00000514557 494 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.09□□□□□ -1.43
MSH3P20585 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC6.09□□□□□ -1.43
MSH3P20585 AC008429.4-201ENST00000521201 182 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.09□□□□□ -1.43
MSH3P20585 AC130365.2-201ENST00000525882 1201 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AC021269.1-201ENST00000526860 705 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 AC084121.1-201ENST00000533882 835 ntBASIC6.09□□□□□ -1.43
MSH3P20585 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.09□□□□□ -1.43
MSH3P20585 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.09□□□□□ -1.43
MSH3P20585 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.44
MSH3P20585 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
MSH3P20585 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.09□□□□□ -1.44
MSH3P20585 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
MSH3P20585 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
MSH3P20585 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
MSH3P20585 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.08□□□□□ -1.44
MSH3P20585 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.08□□□□□ -1.44
MSH3P20585 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.08□□□□□ -1.44
MSH3P20585 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 RNU6-167P-201ENST00000384292 106 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AL132875.1-201ENST00000403623 949 ntBASIC6.08□□□□□ -1.44
MSH3P20585 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.08□□□□□ -1.44
MSH3P20585 AC016027.5-201ENST00000427227 210 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC002553.3-201ENST00000453002 341 ntBASIC6.08□□□□□ -1.44
MSH3P20585 RAB28P2-201ENST00000454299 641 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC112187.1-201ENST00000455837 479 ntBASIC6.08□□□□□ -1.44
MSH3P20585 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.08□□□□□ -1.44
MSH3P20585 RN7SL168P-201ENST00000463821 279 ntBASIC6.08□□□□□ -1.44
MSH3P20585 SLC25A51P1-201ENST00000468432 871 ntBASIC6.08□□□□□ -1.44
MSH3P20585 RN7SL741P-201ENST00000482473 289 ntBASIC6.08□□□□□ -1.44
MSH3P20585 PPP1R11P1-201ENST00000486095 376 ntBASIC6.08□□□□□ -1.44
MSH3P20585 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.08□□□□□ -1.44
MSH3P20585 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.08□□□□□ -1.44
MSH3P20585 HSD3BP3-201ENST00000514706 994 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC008676.3-201ENST00000521237 435 ntBASIC6.08□□□□□ -1.44
MSH3P20585 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 OR6M2P-201ENST00000529831 871 ntBASIC6.08□□□□□ -1.44
MSH3P20585 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.08□□□□□ -1.44
MSH3P20585 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 AC023310.2-201ENST00000553844 547 ntBASIC6.08□□□□□ -1.44
MSH3P20585 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 AL845552.1-201ENST00000556820 323 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC6.08□□□□□ -1.44
MSH3P20585 AC007346.1-201ENST00000569208 867 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 AC020916.2-201ENST00000591242 360 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.08□□□□□ -1.44
MSH3P20585 AC141002.1-201ENST00000607025 279 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC097641.3-201ENST00000613523 464 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AL138960.1-201ENST00000613838 513 ntBASIC6.08□□□□□ -1.44
MSH3P20585 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 AP003072.5-201ENST00000623872 773 ntBASIC6.08□□□□□ -1.44
MSH3P20585 AC073592.6-201ENST00000624271 415 ntBASIC6.08□□□□□ -1.44
MSH3P20585 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.08□□□□□ -1.44
MSH3P20585 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSH3P20585 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.08□□□□□ -1.44
MSH3P20585 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 AL137141.1-201ENST00000624622 4836 ntBASIC6.07□□□□□ -1.44
MSH3P20585 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC6.07□□□□□ -1.44
MSH3P20585 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.07□□□□□ -1.44
MSH3P20585 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms