Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 AC005261.4-201ENST00000600047 1385 ntBASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 AL121949.2-201ENST00000403446 1548 ntBASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC9.1□□□□□ -0.95
CSB-PGBD3P0DP91 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC110998.1-201ENST00000519029 2053 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC009948.5-201ENST00000624360 4406 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC008432.1-201ENST00000615912 1320 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RNA5SP321-201ENST00000362722 111 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RNA5SP433-201ENST00000364491 114 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 BMS1P3-201ENST00000372011 932 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 YWHAZP4-201ENST00000392459 708 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC096537.2-201ENST00000413707 714 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL139415.1-201ENST00000424862 352 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL035407.1-201ENST00000429211 571 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 BX119904.1-201ENST00000432026 348 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 USP9YP24-201ENST00000434374 697 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RPL6P30-201ENST00000443382 862 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 USP9YP17-201ENST00000444617 696 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 POU5F1P5-201ENST00000445059 658 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 HMGN1P2-201ENST00000445197 310 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 CCRL1P1-201ENST00000449542 1053 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC104849.1-201ENST00000462623 405 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RNA5SP441-201ENST00000516809 88 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 SAA3P-201ENST00000533267 365 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL845552.1-201ENST00000556820 323 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 ULK4P2-202ENST00000564187 492 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC005726.4-201ENST00000582858 458 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC107952.2-201ENST00000606048 486 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 uc_338.31-201ENST00000615595 186 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL133370.2-201ENST00000619934 439 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL035661.1-201ENST00000620459 1144 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL122023.1-201ENST00000622847 530 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AC114546.4-201ENST00000624413 369 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 SNX18P10-201ENST00000625014 519 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AL353763.2-201ENST00000623489 1903 ntBASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
CSB-PGBD3P0DP91 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC9.09□□□□□ -0.96
CSB-PGBD3P0DP91 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.96
CSB-PGBD3P0DP91 GDA-209ENST00000545168 5362 ntTSL 2 BASIC9.09□□□□□ -0.96
CSB-PGBD3P0DP91 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 AMELX-201ENST00000348912 737 ntTSL 5 BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 RNU6-1251P-201ENST00000364502 107 ntBASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 RN7SKP47-201ENST00000365347 328 ntBASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 RNA5SP77-201ENST00000365394 120 ntBASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
CSB-PGBD3P0DP91 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC9.08□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms