Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SCNM1-201ENST00000368902 869 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 FAM107B-202ENST00000378458 1284 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 Y_RNA.557-201ENST00000384680 107 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AL031864.1-201ENST00000392075 423 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 RNU6ATAC23P-201ENST00000408448 123 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 RPL26P37-201ENST00000411983 438 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 RPS12P24-201ENST00000412619 387 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 OR9I2P-201ENST00000427941 903 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 PIGCP2-201ENST00000433617 835 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 TMEM127-203ENST00000435268 582 ntTSL 3 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 RPL15P1-201ENST00000439981 600 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC007349.2-201ENST00000439998 553 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 MDC1-AS1-201ENST00000442150 738 ntTSL 3 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AL392003.2-201ENST00000451015 679 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 MTND1P12-201ENST00000455231 147 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC020636.1-201ENST00000469268 565 ntTSL 4 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC104164.4-201ENST00000483456 493 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 OR7E163P-201ENST00000505943 894 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 GUSBP3-201ENST00000509348 423 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 SMURF2P1-201ENST00000514992 481 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 STMN2-203ENST00000518491 585 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 CD63-206ENST00000548160 648 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AL110292.1-202ENST00000552303 568 ntTSL 4 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC093249.5-201ENST00000568120 430 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC090079.1-201ENST00000572092 1183 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 MIR4680-201ENST00000580906 66 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LGALS17A-205ENST00000598736 1111 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC113361.1-201ENST00000606683 543 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AL157817.1-201ENST00000614264 790 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 MIR7113-201ENST00000621222 59 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AP000590.1-201ENST00000624943 464 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC084879.1-201ENST00000636165 1201 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC135068.12-201ENST00000637370 931 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC245100.4-207ENST00000640776 1082 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC011453.1-201ENST00000597619 2239 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC011447.7-201ENST00000624228 1590 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 TRIM6-203ENST00000380107 2590 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 PCBP2-222ENST00000552296 1342 ntAPPRIS ALT1 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AL391095.1-201ENST00000422519 2004 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 GP2-201ENST00000302555 3406 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LINC02357-201ENST00000637313 1622 ntTSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 SMARCA2-202ENST00000324954 1781 ntTSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 CAST-222ENST00000508579 1758 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LINC01856-201ENST00000450840 2398 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 NKAIN2-202ENST00000368417 3115 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 C14orf2-203ENST00000553430 1659 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 CXCR6-201ENST00000304552 1962 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC015871.4-201ENST00000624650 2260 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 ZNF248-208ENST00000611278 4204 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 SMIM7-201ENST00000358726 850 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 MTCP1-201ENST00000362018 570 ntAPPRIS P1 TSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 RNU5D-1-201ENST00000363299 116 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 U8.3-201ENST00000363321 132 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 GNL2-201ENST00000373062 2334 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AP002761.1-201ENST00000400985 262 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 WDPCP-206ENST00000409562 3544 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 TEX41-204ENST00000423031 491 ntTSL 4 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AL513175.1-201ENST00000431492 780 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LYZL4-202ENST00000441172 838 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 IFITM4P-207ENST00000441380 420 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AL353898.1-201ENST00000444055 238 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AL445189.2-201ENST00000447543 259 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC073415.1-201ENST00000449240 153 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 EZR-AS1-201ENST00000451712 217 ntTSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 SPATA24-203ENST00000451821 646 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 RN7SL236P-201ENST00000484759 284 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LINC02160-201ENST00000503577 517 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 NMNAT3-214ENST00000514703 584 ntTSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 RPL10P19-203ENST00000522289 663 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AP007216.1-201ENST00000563932 385 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 CDRT7-201ENST00000568256 767 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC004257.1-201ENST00000593588 277 ntTSL 5 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC113554.1-201ENST00000606284 490 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LINC02018-202ENST00000608707 445 ntTSL 3 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 uc_338.2-201ENST00000612963 182 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 PDZK1P1-203ENST00000616036 577 ntTSL 4 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 AC104010.1-201ENST00000616889 150 ntBASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 LINC00608-202ENST00000432733 2818 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
VPS9D1Q9Y2B5 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms