Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.71□□□□□ -1.34
USP39Q53GS9 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.71□□□□□ -1.34
USP39Q53GS9 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
USP39Q53GS9 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.7□□□□□ -1.34
USP39Q53GS9 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.7□□□□□ -1.34
USP39Q53GS9 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.7□□□□□ -1.34
USP39Q53GS9 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
USP39Q53GS9 MRPS6P2-201ENST00000381143 370 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 MIR188-201ENST00000385034 86 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 TAS2R15P-201ENST00000390674 928 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC005005.2-201ENST00000420779 380 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.7□□□□□ -1.34
USP39Q53GS9 FABP5P2-201ENST00000439042 408 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 RPS26P41-201ENST00000450370 284 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 RN7SL254P-201ENST00000460609 284 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.7□□□□□ -1.34
USP39Q53GS9 LECT2-203ENST00000512872 762 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.7□□□□□ -1.34
USP39Q53GS9 OR10D4P-201ENST00000525892 951 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC6.7□□□□□ -1.34
USP39Q53GS9 MTND2P17-201ENST00000550281 688 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.7□□□□□ -1.34
USP39Q53GS9 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AL591767.3-201ENST00000554632 525 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC026956.1-201ENST00000558741 396 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC008088.1-201ENST00000580993 280 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AP001357.1-201ENST00000586304 1053 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 SNORD96A-201ENST00000606577 79 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC245008.1-201ENST00000608123 476 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC093635.1-201ENST00000609028 555 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC022306.2-201ENST00000617563 647 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC009032.1-201ENST00000617574 431 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC131009.3-201ENST00000621809 287 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AP000943.4-201ENST00000622912 357 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AC069542.2-201ENST00000624816 216 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 AL049536.1-201ENST00000625043 744 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC008691.1-209ENST00000642094 814 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 CLCA3P-203ENST00000490028 2781 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 PSMC1P6-201ENST00000477233 1319 ntBASIC6.7□□□□□ -1.34
USP39Q53GS9 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.7□□□□□ -1.34
USP39Q53GS9 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
USP39Q53GS9 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.7□□□□□ -1.34
USP39Q53GS9 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 OR4G1P-202ENST00000641173 1788 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.69□□□□□ -1.34
USP39Q53GS9 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 RNU1-84P-201ENST00000365447 164 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.69□□□□□ -1.34
USP39Q53GS9 RNA5SP198-201ENST00000410376 127 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AL929472.1-201ENST00000417484 429 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 MORF4L1P6-201ENST00000418771 268 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.69□□□□□ -1.34
USP39Q53GS9 AC023141.6-201ENST00000429418 337 ntBASIC6.69□□□□□ -1.34
USP39Q53GS9 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms