Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNA5SP308-201ENST00000362532 115 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNA5SP350-201ENST00000363298 111 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNA5SP85-201ENST00000365378 119 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AL050335.1-201ENST00000396909 869 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC136624.1-201ENST00000400791 413 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 CYCSP17-201ENST00000407870 315 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNA5SP251-201ENST00000410614 137 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNU2-22P-201ENST00000411266 212 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC104843.2-201ENST00000427666 297 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 FTLP19-201ENST00000433300 394 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC110602.1-201ENST00000437414 318 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RPS3AP49-201ENST00000472161 790 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC128716.1-201ENST00000475129 166 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 DEFB109A-201ENST00000482450 265 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RN7SL37P-201ENST00000490461 307 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC093878.1-201ENST00000515630 432 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC025423.2-201ENST00000537570 439 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC090022.1-201ENST00000546569 311 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC008521.2-201ENST00000591021 259 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 QTRT1P1-201ENST00000604344 1078 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC004836.1-201ENST00000623032 634 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 Z83820.1-201ENST00000456978 1499 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 AP001284.1-201ENST00000528393 2118 ntBASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.38□□□□□ -1.55
PDLIM3Q53GG5 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AC006511.3-201ENST00000624929 1783 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RNA5SP514-201ENST00000363717 111 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RN7SKP275-201ENST00000364626 301 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 LCN1P2-201ENST00000372030 223 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RNU1-46P-201ENST00000384425 164 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AL136116.2-201ENST00000404020 785 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AL049697.3-201ENST00000406493 982 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AL023284.3-201ENST00000407767 334 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RNU4-64P-201ENST00000410795 131 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AC000089.1-201ENST00000424559 801 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 GTF2IP14-201ENST00000441415 586 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RN7SL362P-201ENST00000494228 267 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 MTND2P31-201ENST00000512602 616 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 ACTR6P1-201ENST00000514311 1104 ntBASIC5.37□□□□□ -1.55
PDLIM3Q53GG5 RNA5SP318-201ENST00000516352 92 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms