Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AL445383.1-201ENST00000554689 874 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 GMCL1P2-201ENST00000605230 823 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 BX322635.1-201ENST00000605804 496 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC117490.2-201ENST00000610042 594 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC120057.5-201ENST00000623840 154 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC073488.3-201ENST00000631611 778 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 CLCA3P-203ENST00000490028 2781 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC119674.1-204ENST00000641348 1343 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC096992.2-201ENST00000609553 1684 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 OR9K1P-201ENST00000326513 941 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL663061.1-201ENST00000416625 580 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL163193.1-201ENST00000444895 788 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 MORF4L1P4-201ENST00000450245 976 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 MTND2P3-201ENST00000452458 470 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 RPL17P2-201ENST00000491913 451 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 RNA5SP418-201ENST00000515951 117 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC092375.1-201ENST00000550410 637 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC068305.2-201ENST00000550567 1205 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC020915.5-201ENST00000596836 964 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC245052.7-201ENST00000601161 359 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL352984.2-202ENST00000613699 155 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL354696.1-201ENST00000614652 497 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AC012254.5-201ENST00000623573 478 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 TEX41-255ENST00000626404 610 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 Z97989.1-201ENST00000531702 2421 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PSMC1P6-201ENST00000477233 1319 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 AL354854.1-201ENST00000455940 1363 ntBASIC6.18□□□□□ -1.42
COL28A1Q2UY09 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL28A1Q2UY09 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 RACGAP1P-201ENST00000550663 1879 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 OR11H13P-201ENST00000359695 979 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 SNORA70.3-201ENST00000365075 132 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MRPS6P2-201ENST00000381143 370 ntBASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms