Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX2P48431 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SOX2P48431 RNA5SP321-201ENST00000362722 111 ntBASIC5.62□□□□□ -1.51
SOX2P48431 RNU1-56P-201ENST00000391303 164 ntBASIC5.62□□□□□ -1.51
SOX2P48431 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 RPL5P20-201ENST00000403848 896 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AL136100.1-201ENST00000407696 330 ntBASIC5.62□□□□□ -1.51
SOX2P48431 SNORA11D-201ENST00000408548 128 ntBASIC5.62□□□□□ -1.51
SOX2P48431 SNORA11E-201ENST00000408778 128 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 MRPS21P5-201ENST00000417885 231 ntBASIC5.62□□□□□ -1.51
SOX2P48431 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.62□□□□□ -1.51
SOX2P48431 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SOX2P48431 AC000089.1-201ENST00000424559 801 ntBASIC5.62□□□□□ -1.51
SOX2P48431 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SOX2P48431 PUDPP2-201ENST00000431423 643 ntBASIC5.62□□□□□ -1.51
SOX2P48431 MTND2P2-201ENST00000434633 945 ntBASIC5.62□□□□□ -1.51
SOX2P48431 MTND1P26-201ENST00000440488 538 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 GAPDHP20-201ENST00000444107 1007 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 PFN2-213ENST00000494827 793 ntTSL 4 BASIC5.62□□□□□ -1.51
SOX2P48431 HMGB1P3-201ENST00000502802 616 ntBASIC5.62□□□□□ -1.51
SOX2P48431 B3GNTL1P1-201ENST00000509174 289 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 CIR1P1-201ENST00000524055 1133 ntBASIC5.62□□□□□ -1.51
SOX2P48431 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX2P48431 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 ACER3-213ENST00000533873 929 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 OR4A6P-201ENST00000534364 970 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 DCN-215ENST00000550099 719 ntTSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
SOX2P48431 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 RN7SL208P-201ENST00000577964 296 ntBASIC5.62□□□□□ -1.51
SOX2P48431 BNIP3P38-201ENST00000601117 544 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC023762.1-201ENST00000603280 584 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC012213.4-201ENST00000606457 354 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC139792.1-201ENST00000607051 647 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AL121652.1-201ENST00000608851 448 ntBASIC5.62□□□□□ -1.51
SOX2P48431 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC5.62□□□□□ -1.51
SOX2P48431 TP53TG1_2.1-201ENST00000611226 182 ntBASIC5.62□□□□□ -1.51
SOX2P48431 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.62□□□□□ -1.51
SOX2P48431 AL109659.3-201ENST00000624985 950 ntBASIC5.62□□□□□ -1.51
SOX2P48431 OR6C71P-202ENST00000641886 1107 ntBASIC5.62□□□□□ -1.51
SOX2P48431 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SOX2P48431 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SOX2P48431 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.61□□□□□ -1.51
SOX2P48431 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SOX2P48431 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SOX2P48431 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SOX2P48431 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SOX2P48431 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 MIR16-2-201ENST00000362117 81 ntBASIC5.61□□□□□ -1.51
SOX2P48431 RN7SKP130-201ENST00000364924 301 ntBASIC5.61□□□□□ -1.51
SOX2P48431 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SOX2P48431 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SOX2P48431 VN1R51P-201ENST00000411675 945 ntBASIC5.61□□□□□ -1.51
SOX2P48431 OR52N3P-201ENST00000413417 934 ntBASIC5.61□□□□□ -1.51
SOX2P48431 RPL23AP18-201ENST00000416139 468 ntBASIC5.61□□□□□ -1.51
SOX2P48431 AL359092.1-201ENST00000417156 265 ntBASIC5.61□□□□□ -1.51
SOX2P48431 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.61□□□□□ -1.51
SOX2P48431 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC5.61□□□□□ -1.51
SOX2P48431 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.61□□□□□ -1.51
SOX2P48431 AC007563.3-201ENST00000433233 371 ntBASIC5.61□□□□□ -1.51
SOX2P48431 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC5.61□□□□□ -1.51
SOX2P48431 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC5.61□□□□□ -1.51
SOX2P48431 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.61□□□□□ -1.51
SOX2P48431 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC5.61□□□□□ -1.51
SOX2P48431 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SOX2P48431 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.61□□□□□ -1.51
SOX2P48431 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC5.61□□□□□ -1.51
SOX2P48431 RPS26P41-201ENST00000450370 284 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms