Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.87□□□□□ -1.15
HOXC9P31274 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC7.87□□□□□ -1.15
HOXC9P31274 RN7SL72P-201ENST00000460697 269 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 AC022215.1-201ENST00000481770 362 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC7.87□□□□□ -1.15
HOXC9P31274 RNU6-615P-201ENST00000516065 106 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 HMGB1P42-201ENST00000532126 553 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 GARSP1-201ENST00000570895 719 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.87□□□□□ -1.15
HOXC9P31274 MIR1273E-201ENST00000581165 102 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 AC027334.1-201ENST00000603257 310 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
HOXC9P31274 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.87□□□□□ -1.15
HOXC9P31274 AC008937.3-201ENST00000606813 1700 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.86□□□□□ -1.15
HOXC9P31274 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 RN7SKP124-201ENST00000364730 341 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 OR2AT2P-201ENST00000413438 905 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC7.86□□□□□ -1.15
HOXC9P31274 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC7.86□□□□□ -1.15
HOXC9P31274 AC007562.1-201ENST00000421819 517 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 CYCSP51-201ENST00000443545 318 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 AC023274.2-201ENST00000445264 521 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 MYO5BP2-201ENST00000449815 1277 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC7.86□□□□□ -1.15
HOXC9P31274 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.86□□□□□ -1.15
HOXC9P31274 TSACC-207ENST00000470342 601 ntTSL 2 BASIC7.86□□□□□ -1.15
HOXC9P31274 AC068522.1-201ENST00000482895 345 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 AC109481.1-201ENST00000509173 282 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC7.86□□□□□ -1.15
HOXC9P31274 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC7.86□□□□□ -1.15
HOXC9P31274 AC079395.2-201ENST00000610982 737 ntBASIC7.86□□□□□ -1.15
HOXC9P31274 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC7.86□□□□□ -1.15
HOXC9P31274 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
HOXC9P31274 PRNCR1-201ENST00000635449 12727 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
HOXC9P31274 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC7.85□□□□□ -1.15
HOXC9P31274 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
HOXC9P31274 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
HOXC9P31274 OR9K1P-201ENST00000326513 941 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 OR6E1P-201ENST00000414424 923 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 AL022331.1-201ENST00000429025 477 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 FRG2FP-204ENST00000453982 852 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.85□□□□□ -1.15
HOXC9P31274 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.85□□□□□ -1.15
HOXC9P31274 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.85□□□□□ -1.15
HOXC9P31274 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.85□□□□□ -1.15
HOXC9P31274 MRPS16P1-201ENST00000523462 412 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.85□□□□□ -1.15
HOXC9P31274 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.85□□□□□ -1.15
HOXC9P31274 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC7.85□□□□□ -1.15
HOXC9P31274 AC091193.1-201ENST00000604640 448 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.85□□□□□ -1.15
HOXC9P31274 SDR42E1P1-201ENST00000611327 477 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 AL035661.1-201ENST00000620459 1144 ntBASIC7.85□□□□□ -1.15
HOXC9P31274 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC7.85□□□□□ -1.15
HOXC9P31274 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.85□□□□□ -1.15
HOXC9P31274 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HOXC9P31274 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC7.85□□□□□ -1.15
HOXC9P31274 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.84□□□□□ -1.15
HOXC9P31274 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 TMEM75-201ENST00000624314 2165 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
HOXC9P31274 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC7.84□□□□□ -1.15
HOXC9P31274 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
HOXC9P31274 AL662795.2-201ENST00000624252 3706 ntBASIC7.84□□□□□ -1.15
HOXC9P31274 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms