Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 ELMO2-202ENST00000352077 2157 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 MAP3K19-205ENST00000392917 1765 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 MTCO1P25-201ENST00000414449 1799 ntBASIC7.39□□□□□ -1.23
MSX1P28360 ACTR6-209ENST00000551617 1715 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 ARG1-203ENST00000368087 1532 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 SLC2A3P2-201ENST00000331747 1480 ntBASIC7.39□□□□□ -1.23
MSX1P28360 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 GIMAP2-201ENST00000223293 1449 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 RPL11P4-201ENST00000332269 436 ntBASIC7.39□□□□□ -1.23
MSX1P28360 RNU6-1090P-201ENST00000364065 94 ntBASIC7.39□□□□□ -1.23
MSX1P28360 PAGE5-203ENST00000374955 540 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 CST13P-201ENST00000376992 428 ntBASIC7.39□□□□□ -1.23
MSX1P28360 MIR128-2-201ENST00000384893 84 ntBASIC7.39□□□□□ -1.23
MSX1P28360 RNU6-332P-201ENST00000391193 108 ntBASIC7.39□□□□□ -1.23
MSX1P28360 CALM2P3-201ENST00000400429 449 ntBASIC7.39□□□□□ -1.23
MSX1P28360 EEF1GP6-201ENST00000402309 905 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AL356776.1-201ENST00000406574 447 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AL109918.1-202ENST00000406724 436 ntBASIC7.39□□□□□ -1.23
MSX1P28360 RNU6-575P-201ENST00000411326 105 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC007390.1-201ENST00000415722 356 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AL031848.1-201ENST00000419034 351 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 AC092647.1-201ENST00000420654 287 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AL355516.1-201ENST00000422082 746 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 RPL4P4-201ENST00000422486 1284 ntBASIC7.39□□□□□ -1.23
MSX1P28360 OR5W1P-201ENST00000423705 938 ntBASIC7.39□□□□□ -1.23
MSX1P28360 RPL19P21-201ENST00000424919 591 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AL589990.1-201ENST00000432210 592 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 PSMD8P1-201ENST00000436275 769 ntBASIC7.39□□□□□ -1.23
MSX1P28360 LSM3P3-201ENST00000436601 306 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC002066.1-202ENST00000439070 699 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC7.39□□□□□ -1.23
MSX1P28360 AL451074.1-202ENST00000453762 989 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AL135908.1-202ENST00000454135 562 ntTSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 PSAT1P4-201ENST00000466500 526 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC105910.1-201ENST00000482585 483 ntBASIC7.39□□□□□ -1.23
MSX1P28360 LARP1BP2-201ENST00000486594 519 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC117395.1-201ENST00000487390 403 ntBASIC7.39□□□□□ -1.23
MSX1P28360 LINC02024-203ENST00000496994 489 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 RPL37-205ENST00000509877 637 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 CCL26-201ENST00000005180 526 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 LINC01397-201ENST00000554808 579 ntTSL 4 BASIC7.39□□□□□ -1.23
MSX1P28360 GSTZ1-216ENST00000556627 919 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AC092720.1-203ENST00000563921 550 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 AC012182.1-201ENST00000570133 895 ntBASIC7.39□□□□□ -1.23
MSX1P28360 OR1P1-201ENST00000571766 994 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
MSX1P28360 RPS3AP23-202ENST00000574601 686 ntBASIC7.39□□□□□ -1.23
MSX1P28360 PRR13P4-201ENST00000577786 421 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC7.39□□□□□ -1.23
MSX1P28360 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 AL109936.2-201ENST00000605350 650 ntBASIC7.39□□□□□ -1.23
MSX1P28360 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 AL451054.3-201ENST00000611115 776 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 Metazoa_SRP.212-201ENST00000636778 248 ntBASIC7.39□□□□□ -1.23
MSX1P28360 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 DAAM1-201ENST00000360909 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 BMX-202ENST00000348343 2531 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 AMPD3-204ENST00000444303 3994 ntTSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC7.39□□□□□ -1.23
MSX1P28360 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 RUNX1T1-203ENST00000396218 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
MSX1P28360 SCOC-AS1-201ENST00000512692 1987 ntTSL 2 BASIC7.39□□□□□ -1.23
MSX1P28360 YIPF5-201ENST00000274496 3147 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 EPB41L5-202ENST00000331393 1777 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC7.38□□□□□ -1.23
MSX1P28360 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 SELP-202ENST00000367786 2402 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
MSX1P28360 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 VLDLR-AS1-201ENST00000416826 3167 ntTSL 2 BASIC7.38□□□□□ -1.23
MSX1P28360 UPP2-201ENST00000005756 2224 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSX1P28360 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms