Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDCBPO00560 RN7SKP184-201ENST00000362348 333 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.07□□□□□ -1.6
SDCBPO00560 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SDCBPO00560 AL133260.1-201ENST00000405720 405 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.07□□□□□ -1.6
SDCBPO00560 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.07□□□□□ -1.6
SDCBPO00560 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.07□□□□□ -1.6
SDCBPO00560 RN7SL284P-201ENST00000498823 275 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 NATP-201ENST00000523491 878 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 AC005632.2-201ENST00000564271 828 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 AC083837.1-201ENST00000565297 2994 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.07□□□□□ -1.6
SDCBPO00560 AC025857.2-201ENST00000602711 238 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 AC008555.7-201ENST00000605008 583 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 RPSAP75-201ENST00000605848 301 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 PCA3_2.1-201ENST00000612507 409 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 uc_338.26-201ENST00000612659 160 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.07□□□□□ -1.6
SDCBPO00560 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.07□□□□□ -1.6
SDCBPO00560 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.07□□□□□ -1.6
SDCBPO00560 AC011933.2-201ENST00000578539 2790 ntBASIC5.07□□□□□ -1.6
SDCBPO00560 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
SDCBPO00560 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDCBPO00560 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDCBPO00560 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
SDCBPO00560 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDCBPO00560 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDCBPO00560 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 U3.10-201ENST00000364459 214 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SDCBPO00560 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SDCBPO00560 RNA5SP156-201ENST00000410250 110 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 PSMD10P2-201ENST00000432890 672 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC064862.5-201ENST00000440618 334 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 RPL12P49-201ENST00000441100 121 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.06□□□□□ -1.6
SDCBPO00560 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 CEACAMP11-201ENST00000455211 583 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 H3F3AP5-201ENST00000475267 429 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 AC095052.1-201ENST00000509955 863 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC090958.1-201ENST00000511122 351 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 NPIPB14P-203ENST00000532298 987 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.06□□□□□ -1.6
SDCBPO00560 BMS1P16-201ENST00000556075 1147 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.06□□□□□ -1.6
SDCBPO00560 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC069542.2-201ENST00000624816 216 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 SNX18P12-201ENST00000624821 759 ntBASIC5.06□□□□□ -1.6
SDCBPO00560 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.06□□□□□ -1.6
SDCBPO00560 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SDCBPO00560 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SDCBPO00560 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SDCBPO00560 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
SDCBPO00560 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.06□□□□□ -1.6
SDCBPO00560 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms