Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 GAPDHP19-201ENST00000431768 1005 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC128677.1-201ENST00000436016 442 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 REREP2Y-201ENST00000439103 200 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 AL031681.1-201ENST00000443304 400 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 RN7SL39P-201ENST00000462264 297 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 RN7SL393P-201ENST00000463588 296 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC091544.1-201ENST00000484702 348 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 KATNBL1P4-201ENST00000503545 918 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 ASNSP4-201ENST00000511103 447 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 RNA5SP206-201ENST00000516703 121 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 TDGP1-201ENST00000543961 1229 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AL589765.6-201ENST00000601909 549 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 OR8G7P-201ENST00000616658 848 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC092111.2-201ENST00000611627 1414 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 CDC27P2-201ENST00000425026 1922 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC024587.1-201ENST00000505925 2157 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 SNORD1C-201ENST00000363315 78 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 AL157702.1-201ENST00000398764 426 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 IGLV3-4-201ENST00000432300 244 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 AL365220.1-201ENST00000432923 399 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC068491.1-201ENST00000449539 1241 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 RPL23AP60-201ENST00000450011 454 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 AL133351.3-201ENST00000454998 193 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 MIR5010-201ENST00000582846 120 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC021422.1-201ENST00000621212 473 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC211486.4-201ENST00000621495 113 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC073869.7-201ENST00000640874 297 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 Z95114.1-201ENST00000624264 14574 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 MTCO1P7-201ENST00000419523 1542 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.13□□□□□ -1.43
VPS39Q96JC1 CASC19-246ENST00000641625 1606 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC024651.2-201ENST00000562480 2098 ntBASIC6.13□□□□□ -1.43
VPS39Q96JC1 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS39Q96JC1 AC093297.3-201ENST00000607056 2517 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms