Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC139426.3-201ENST00000605648 2059 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 RNU1-49P-201ENST00000363468 159 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 RNA5SP346-201ENST00000363541 121 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 RNA5SP198-201ENST00000410376 127 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AL354868.1-201ENST00000417077 482 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 PPIAP10-201ENST00000438675 458 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AL645936.1-201ENST00000441979 518 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC016908.1-201ENST00000442571 1219 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 RPS27AP3-201ENST00000453803 454 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 YRDCP3-201ENST00000456507 480 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC095052.1-201ENST00000509955 863 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 ZNF519P4-201ENST00000514008 125 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 OR4A41P-201ENST00000533053 928 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AP001858.2-201ENST00000536213 601 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC092865.1-201ENST00000544395 1023 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC121758.1-202ENST00000556917 658 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 NPIPB1P-202ENST00000588786 828 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AL021368.3-201ENST00000607119 578 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC005828.7-201ENST00000607331 556 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AC097641.3-201ENST00000613523 464 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AOX3P-204ENST00000491025 2107 ntBASIC5.47□□□□□ -1.53
SKA3Q8IX90 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SKA3Q8IX90 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
SKA3Q8IX90 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.46□□□□□ -1.53
SKA3Q8IX90 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SKA3Q8IX90 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.46□□□□□ -1.53
SKA3Q8IX90 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SKA3Q8IX90 AC079753.1-201ENST00000623243 3868 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 PPBPP2-201ENST00000513150 1362 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 AC016745.2-201ENST00000608834 3443 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SKA3Q8IX90 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 GNG5P2-201ENST00000372054 207 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 RPL23AP17-201ENST00000401064 499 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 AL139805.1-201ENST00000407837 289 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 TMA16P2-201ENST00000413187 601 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 BX119904.3-201ENST00000428194 957 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 SLC25A51P1-201ENST00000468432 871 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 NPM1P28-201ENST00000492269 840 ntBASIC5.46□□□□□ -1.54
SKA3Q8IX90 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SKA3Q8IX90 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.46□□□□□ -1.54
SKA3Q8IX90 BMS1P16-201ENST00000556075 1147 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms