Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC008957.3-201ENST00000624112 2242 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC011815.2-201ENST00000618230 2021 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 RNA5SP333-201ENST00000363466 118 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 RNA5SP334-201ENST00000364825 118 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC113412.1-201ENST00000425840 504 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 RPS21P4-201ENST00000487122 248 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 HIGD1AP5-201ENST00000529959 259 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC004825.1-201ENST00000555068 586 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC003992.1-201ENST00000635364 557 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 PRNCR1-201ENST00000635449 12727 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 SALL4P7-201ENST00000555779 3120 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AL391261.1-201ENST00000555712 1479 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 RNA5SP507-201ENST00000363603 121 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 OR13K1P-201ENST00000444577 975 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 LRRC37A14P-201ENST00000452297 462 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 CR383656.6-201ENST00000550518 394 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 MIR3691-201ENST00000578066 90 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AL512329.2-201ENST00000607350 548 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC090510.2-201ENST00000617465 629 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AP000550.3-201ENST00000637734 379 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC011416.1-201ENST00000514947 1732 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC024587.1-201ENST00000505925 2157 ntBASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
CCDC88AQ3V6T2 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC022819.1-201ENST00000563495 3910 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AL096829.1-201ENST00000413677 457 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 CUBNP2-201ENST00000443534 1139 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 OR7E157P-201ENST00000494376 911 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 HMGN2P6-201ENST00000551091 273 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC011497.2-201ENST00000600255 639 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms