Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.24□□□□□ -1.57
CDX1P47902 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 AC010132.2-201ENST00000295493 1043 ntBASIC5.24□□□□□ -1.57
CDX1P47902 RNA5SP321-201ENST00000362722 111 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CDX1P47902 RN7SKP17-201ENST00000411242 351 ntBASIC5.24□□□□□ -1.57
CDX1P47902 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 AC239367.3-201ENST00000428996 814 ntBASIC5.24□□□□□ -1.57
CDX1P47902 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 ATP6V1G1P4-201ENST00000438388 335 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AL031681.1-201ENST00000443304 400 ntBASIC5.24□□□□□ -1.57
CDX1P47902 RPS18P1-201ENST00000447840 458 ntBASIC5.24□□□□□ -1.57
CDX1P47902 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AC104629.2-201ENST00000468627 598 ntBASIC5.24□□□□□ -1.57
CDX1P47902 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 STRADBP1-201ENST00000478954 1281 ntBASIC5.24□□□□□ -1.57
CDX1P47902 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 AL390198.2-201ENST00000510553 222 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AC011352.2-201ENST00000514574 1016 ntBASIC5.24□□□□□ -1.57
CDX1P47902 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5.24□□□□□ -1.57
CDX1P47902 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AC140063.1-201ENST00000541343 259 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AC007068.2-201ENST00000543168 395 ntBASIC5.24□□□□□ -1.57
CDX1P47902 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CDX1P47902 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.24□□□□□ -1.57
CDX1P47902 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC5.24□□□□□ -1.57
CDX1P47902 AC010487.1-201ENST00000594408 1172 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC5.24□□□□□ -1.57
CDX1P47902 AC091133.5-201ENST00000603088 301 ntBASIC5.24□□□□□ -1.57
CDX1P47902 HMGB1P51-201ENST00000605166 638 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AC010333.3-201ENST00000615100 402 ntBASIC5.24□□□□□ -1.57
CDX1P47902 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 AC048341.3-201ENST00000619323 491 ntBASIC5.24□□□□□ -1.57
CDX1P47902 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.24□□□□□ -1.57
CDX1P47902 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
CDX1P47902 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.24□□□□□ -1.57
CDX1P47902 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CDX1P47902 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CDX1P47902 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 RNA5SP65-201ENST00000363166 119 ntBASIC5.23□□□□□ -1.57
CDX1P47902 RN7SKP81-201ENST00000365603 331 ntBASIC5.23□□□□□ -1.57
CDX1P47902 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 NOX1-203ENST00000372964 661 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CDX1P47902 MIR191-201ENST00000384873 92 ntBASIC5.23□□□□□ -1.57
CDX1P47902 ST13P16-201ENST00000401760 781 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 EEF1B2P8-201ENST00000414101 671 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AL512504.1-201ENST00000415494 778 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AL356806.1-201ENST00000422524 916 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 RNF19BPX-201ENST00000426224 625 ntBASIC5.23□□□□□ -1.57
CDX1P47902 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 RSL24D1P8-201ENST00000434442 492 ntBASIC5.23□□□□□ -1.57
CDX1P47902 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 Z84478.1-201ENST00000438230 1219 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 GTF2IP14-201ENST00000441415 586 ntBASIC5.23□□□□□ -1.57
CDX1P47902 CRYGGP-201ENST00000443337 145 ntBASIC5.23□□□□□ -1.57
CDX1P47902 PFN1P11-201ENST00000445829 389 ntBASIC5.23□□□□□ -1.57
CDX1P47902 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 AC004890.1-201ENST00000461005 181 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AC099340.1-201ENST00000475247 599 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms