Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OR1F12-201ENST00000402365 945 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AL354707.3-201ENST00000427308 331 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 NDUFA5P1-201ENST00000433858 341 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC7.21□□□□□ -1.26
SMARCA1P28370 GAPDHP23-201ENST00000444823 993 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC7.21□□□□□ -1.26
SMARCA1P28370 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC7.21□□□□□ -1.26
SMARCA1P28370 AC021006.1-201ENST00000489849 553 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC7.21□□□□□ -1.26
SMARCA1P28370 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.21□□□□□ -1.26
SMARCA1P28370 AL136520.1-202ENST00000555494 763 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC011270.1-201ENST00000558606 583 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC7.21□□□□□ -1.26
SMARCA1P28370 MTND2P13-201ENST00000577438 1039 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC027229.1-201ENST00000583887 253 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC124916.2-201ENST00000604416 224 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC7.21□□□□□ -1.26
SMARCA1P28370 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.21□□□□□ -1.26
SMARCA1P28370 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 AL591848.4-201ENST00000567832 3472 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.21□□□□□ -1.26
SMARCA1P28370 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.21□□□□□ -1.26
SMARCA1P28370 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.2□□□□□ -1.26
SMARCA1P28370 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AC090220.1-201ENST00000593078 1699 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC7.2□□□□□ -1.26
SMARCA1P28370 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC7.2□□□□□ -1.26
SMARCA1P28370 SMARCE1P6-201ENST00000398372 1216 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 RPL24P2-201ENST00000421023 475 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC7.2□□□□□ -1.26
SMARCA1P28370 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC7.2□□□□□ -1.26
SMARCA1P28370 RPS27AP3-201ENST00000453803 454 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AC019084.1-201ENST00000457337 432 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC7.2□□□□□ -1.26
SMARCA1P28370 RN7SL165P-201ENST00000477476 291 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 DEFB109A-201ENST00000482450 265 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC7.2□□□□□ -1.26
SMARCA1P28370 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC7.2□□□□□ -1.26
SMARCA1P28370 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AL845552.1-201ENST00000556820 323 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC7.2□□□□□ -1.26
SMARCA1P28370 MIR4271-201ENST00000582451 67 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AC011497.2-201ENST00000600255 639 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 BNIP3P35-201ENST00000604530 490 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 OXSM-209ENST00000626005 309 ntTSL 3 BASIC7.2□□□□□ -1.26
SMARCA1P28370 AC073488.6-201ENST00000632293 754 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AC005261.2-201ENST00000593427 4258 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 AL359091.1-201ENST00000449048 1734 ntBASIC7.2□□□□□ -1.26
SMARCA1P28370 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.2□□□□□ -1.26
SMARCA1P28370 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.2□□□□□ -1.26
SMARCA1P28370 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SMARCA1P28370 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC7.19□□□□□ -1.26
SMARCA1P28370 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LCOR-201ENST00000286067 4542 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SMARCA1P28370 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
SMARCA1P28370 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SMARCA1P28370 RNA5SP232-201ENST00000364144 119 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 SNORA43.1-201ENST00000364863 140 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AP003170.5-201ENST00000397185 335 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 RNU6-564P-201ENST00000410983 104 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AC007064.3-201ENST00000422608 359 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 MTCO1P57-201ENST00000432182 261 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 OR3D1P-201ENST00000438288 955 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms