Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LINC02200-203ENST00000513687 541 ntTSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SKP46-201ENST00000515942 234 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 COX6B1P4-201ENST00000519826 484 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC008676.1-202ENST00000520658 545 ntTSL 4 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 TPM3P3-201ENST00000521343 354 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AP006245.2-201ENST00000522004 300 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 SNRPCP6-201ENST00000528310 210 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 TMEM107-209ENST00000533070 726 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 DYNLL1P4-201ENST00000549314 266 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC024270.1-201ENST00000559181 404 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RPLP1-205ENST00000560274 256 ntTSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC02349-201ENST00000561386 963 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL376P-201ENST00000578594 264 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC011447.2-201ENST00000592921 283 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AL513327.3-201ENST00000602618 469 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AL355989.2-201ENST00000603304 512 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC108451.2-201ENST00000603875 538 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC012488.1-201ENST00000611221 640 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC025574.2-201ENST00000615621 514 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL126P-201ENST00000616400 299 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 uc_338.37-201ENST00000620113 186 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC022106.2-201ENST00000620114 757 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC018692.2-201ENST00000624130 348 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AL022329.3-201ENST00000624255 352 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC244517.10-201ENST00000624396 548 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AL109653.2-201ENST00000625029 1065 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC007326.3-201ENST00000636418 176 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 Metazoa_SRP.212-201ENST00000636778 248 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC091046.3-201ENST00000631455 1574 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 TTTY25P-201ENST00000558356 1505 ntBASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 PTPN20-216ENST00000506080 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHKB-CPT1BH3BT56 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC007938.2-201ENST00000604666 2634 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC107068.1-201ENST00000563286 4218 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 HDAC1P2-201ENST00000453661 1398 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 RBP2-201ENST00000232217 694 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OCM-201ENST00000242104 695 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OR10D1P-201ENST00000355343 936 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 UBBP1-201ENST00000392399 473 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 FAUP2-201ENST00000394301 401 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 ATP5F1P2-201ENST00000398143 760 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 FDPSP5-201ENST00000399474 1057 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL583835.2-203ENST00000407271 440 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SKP125-201ENST00000410481 302 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL133482.1-201ENST00000415988 498 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL929472.1-201ENST00000417484 429 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 CHCHD3P1-201ENST00000425516 676 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL354761.1-201ENST00000434190 526 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC01468-202ENST00000435813 975 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 CUBNP2-201ENST00000443534 1139 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 PFN1P11-201ENST00000445829 389 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 SNX18P8-201ENST00000455120 874 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC092042.1-201ENST00000457115 509 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC01888-202ENST00000457602 574 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL591473.1-201ENST00000464297 313 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms