Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 AK4P4-201ENST00000419465 646 ntBASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 NME1P1-201ENST00000420914 382 ntBASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 DUTP7-201ENST00000507982 486 ntBASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 APPL2-203ENST00000546731 684 ntTSL 2 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 AC105235.1-201ENST00000623208 1816 ntBASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 Z93929.1-201ENST00000418200 1475 ntBASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 CRP-204ENST00000368112 787 ntTSL 2 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 AC074087.1-201ENST00000512059 724 ntBASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
SHROOM4Q9ULL8 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC110373.1-201ENST00000505994 3505 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 RPL35AP31-201ENST00000418340 337 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC010343.2-201ENST00000510162 224 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 GAPDHP71-201ENST00000511530 1003 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC015802.2-201ENST00000589690 189 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 MIR193BHG-214ENST00000641765 509 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 C4BPAP1-201ENST00000415474 1893 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC005618.1-201ENST00000606901 3148 ntBASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SHROOM4Q9ULL8 AC012254.3-201ENST00000591183 2117 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 RNA5SP183-201ENST00000362452 119 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 RNA5SP478-201ENST00000364657 115 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AL645927.1-201ENST00000396783 406 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AL096829.1-201ENST00000413677 457 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 CYP4F30P-202ENST00000420048 405 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AC009784.1-201ENST00000426484 460 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 RPS27AP3-201ENST00000453803 454 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AL357562.1-201ENST00000624911 609 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 AC117409.1-201ENST00000470499 1310 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 FO082842.1-201ENST00000423552 1370 ntBASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
SHROOM4Q9ULL8 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 MIR433-201ENST00000384837 93 ntBASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 MRM2-202ENST00000407040 582 ntTSL 3 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 AC073850.1-201ENST00000449243 255 ntBASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC11.52□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms