Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 RN7SKP187-201ENST00000365536 330 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 RNA5SP115-201ENST00000411160 107 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC007568.1-201ENST00000422912 471 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC245884.2-201ENST00000426257 404 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AL354707.3-201ENST00000427308 331 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 RPSAP40-201ENST00000442343 891 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 OR52I1-201ENST00000450052 1050 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC019084.1-201ENST00000457337 432 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 CTSLP6-201ENST00000458273 1002 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 RN7SL741P-201ENST00000482473 289 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC021006.1-201ENST00000489849 553 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 IGKV2-19-201ENST00000518132 283 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC003992.1-201ENST00000635364 557 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 OR8A1-204ENST00000642111 1145 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AP001541.1-201ENST00000623322 1904 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 HDAC1P2-201ENST00000453661 1398 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC139426.3-201ENST00000605648 2059 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC005225.5-201ENST00000623547 2225 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC096921.2-201ENST00000561507 1916 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC015799.1-201ENST00000622996 3122 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 RNU2-18P-201ENST00000411224 162 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC130360.1-201ENST00000425489 1117 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 RBMY2AP-201ENST00000445405 1157 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC009963.4-201ENST00000448535 339 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 RBMY2CP-201ENST00000448575 1157 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 RBMY2DP-202ENST00000448881 1157 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC104339.1-201ENST00000465478 348 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 OR7E99P-201ENST00000505750 922 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 RN7SKP67-201ENST00000515905 235 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 RNA5SP473-201ENST00000516402 125 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC130365.2-201ENST00000525882 1201 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC084121.1-201ENST00000533882 835 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 HNRNPCP1-201ENST00000556181 766 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 OR4H6P-201ENST00000563771 921 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC124916.2-201ENST00000604416 224 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC008555.7-201ENST00000605008 583 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC097641.3-201ENST00000613523 464 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AP001052.1-201ENST00000626421 99 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 OR7A1P-202ENST00000641542 1158 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 CCNT2P1-201ENST00000423082 1315 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 AC018717.1-201ENST00000457712 1505 ntBASIC6.13□□□□□ -1.43
VPS35Q96QK1 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
VPS35Q96QK1 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
VPS35Q96QK1 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms