Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 RN7SKP36-201ENST00000363997 312 ntBASIC7.45□□□□□ -1.22
LIG3P49916 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 ARMCX7P-201ENST00000372828 562 ntBASIC7.45□□□□□ -1.22
LIG3P49916 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
LIG3P49916 MCTS2P-201ENST00000394552 546 ntBASIC7.45□□□□□ -1.22
LIG3P49916 RPL24P7-201ENST00000399435 453 ntBASIC7.45□□□□□ -1.22
LIG3P49916 MTCO1P56-201ENST00000401674 224 ntBASIC7.45□□□□□ -1.22
LIG3P49916 MTND4LP17-201ENST00000414607 293 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 PTP4A1P5-201ENST00000420305 455 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC091390.2-201ENST00000432573 374 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC105052.2-201ENST00000434317 794 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AL445567.1-201ENST00000439121 144 ntBASIC7.45□□□□□ -1.22
LIG3P49916 PMS2P9-201ENST00000441237 515 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 GTF2F2P2-201ENST00000445825 721 ntBASIC7.45□□□□□ -1.22
LIG3P49916 SS18L2P1-201ENST00000445923 213 ntBASIC7.45□□□□□ -1.22
LIG3P49916 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 NDUFB4P1-201ENST00000462398 381 ntBASIC7.45□□□□□ -1.22
LIG3P49916 RPL5P15-201ENST00000475870 897 ntBASIC7.45□□□□□ -1.22
LIG3P49916 RPL23AP44-201ENST00000482216 473 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC009153.1-201ENST00000485799 496 ntBASIC7.45□□□□□ -1.22
LIG3P49916 RN7SL153P-201ENST00000486501 292 ntBASIC7.45□□□□□ -1.22
LIG3P49916 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 AC095057.1-201ENST00000507583 168 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC112225.1-201ENST00000508230 297 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG3P49916 AC087360.1-201ENST00000518788 616 ntBASIC7.45□□□□□ -1.22
LIG3P49916 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 MAL2-205ENST00000521048 575 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG3P49916 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 PTS-202ENST00000524931 696 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 AC018523.1-201ENST00000534211 512 ntBASIC7.45□□□□□ -1.22
LIG3P49916 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 UBE2CP4-201ENST00000561405 535 ntBASIC7.45□□□□□ -1.22
LIG3P49916 EIF4EBP2P2-201ENST00000563883 333 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC7.45□□□□□ -1.22
LIG3P49916 RN7SL835P-201ENST00000579920 262 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC103987.3-201ENST00000582071 292 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC7.45□□□□□ -1.22
LIG3P49916 AL035417.2-201ENST00000603887 796 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC025175.1-201ENST00000606482 759 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC135507.1-201ENST00000607214 561 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC093635.1-201ENST00000609028 555 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 OR8A1-204ENST00000642111 1145 ntBASIC7.45□□□□□ -1.22
LIG3P49916 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
LIG3P49916 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 EEF1A1P5-201ENST00000436459 1389 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 UGT2B27P-201ENST00000505092 1620 ntBASIC7.45□□□□□ -1.22
LIG3P49916 AL133320.1-201ENST00000621423 2352 ntBASIC7.45□□□□□ -1.22
LIG3P49916 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.44□□□□□ -1.22
LIG3P49916 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 MED6-212ENST00000615788 1700 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 FAM133CP-201ENST00000332869 704 ntBASIC7.44□□□□□ -1.22
LIG3P49916 OR11H13P-201ENST00000359695 979 ntBASIC7.44□□□□□ -1.22
LIG3P49916 RNU6-83P-201ENST00000384568 112 ntBASIC7.44□□□□□ -1.22
LIG3P49916 MIR575-201ENST00000385013 94 ntBASIC7.44□□□□□ -1.22
LIG3P49916 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC7.44□□□□□ -1.22
LIG3P49916 UBTFL2-201ENST00000411859 1191 ntBASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms