Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 WBP11P1-201ENST00000562560 1931 ntBASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 AL136531.3-201ENST00000624378 3658 ntBASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
CHMP4AQ9BY43 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 LYARP1-201ENST00000436977 1501 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 ODF3-202ENST00000342593 386 ntTSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 OR7E25P-201ENST00000344844 931 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 RNA5SP77-201ENST00000365394 120 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 RN7SKP187-201ENST00000365536 330 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 HMGB3P7-201ENST00000400214 611 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 GLS-203ENST00000409215 632 ntTSL 4 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 OR5W1P-201ENST00000423705 938 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 RBMY2TP-201ENST00000451162 947 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 RN7SL714P-201ENST00000487050 298 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC091874.2-201ENST00000505889 720 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC096754.1-201ENST00000508904 818 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 DCN-209ENST00000546745 1026 ntTSL 3 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC009729.1-201ENST00000548873 1133 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 MIR3154-201ENST00000577829 84 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 MIR4271-201ENST00000582451 67 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 SMIM12P1-201ENST00000603004 274 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 uc_338.29-201ENST00000615099 168 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC006840.1-201ENST00000623069 542 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AL109924.4-201ENST00000623089 670 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 5S_rRNA.29-201ENST00000641250 107 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 UGT2B24P-201ENST00000514441 1597 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AL136984.1-201ENST00000607611 1893 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC093775.1-201ENST00000624154 1868 ntBASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CHMP4AQ9BY43 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 LINC02019-201ENST00000608605 2060 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC027228.2-201ENST00000567141 2154 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 RNA5SP514-201ENST00000363717 111 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 RNU6-1263P-201ENST00000384601 106 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 MIR188-201ENST00000385034 86 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 RBBP4P5-201ENST00000398583 1266 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 OSTCP4-201ENST00000424397 449 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AL139158.1-201ENST00000424719 340 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 SOCS5P1-201ENST00000440415 949 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AL645936.1-201ENST00000441979 518 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 SEPHS1P4-201ENST00000446112 1176 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 EEF1B2P3-201ENST00000447718 678 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 FCF1P7-201ENST00000451185 558 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC005632.2-201ENST00000564271 828 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC073046.2-201ENST00000604756 527 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC010998.3-201ENST00000613871 631 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 MRPL57P1-201ENST00000621486 265 ntBASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms