Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC007485.2-201ENST00000623493 1667 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MELK-211ENST00000545008 2236 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CYP39A1-205ENST00000619708 2269 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL663061.1-201ENST00000416625 580 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RN7SL826P-201ENST00000479724 288 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MIR4489-201ENST00000578869 62 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC108673.3-201ENST00000609183 335 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 USP40-202ENST00000409945 1946 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AP001541.1-201ENST00000623322 1904 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC068870.1-201ENST00000563737 2455 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 UGT2B27P-201ENST00000505092 1620 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL391361.1-201ENST00000405580 489 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 EEF1B2P8-201ENST00000414101 671 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RPS12P17-201ENST00000438591 377 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC112225.1-201ENST00000508230 297 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AP005639.1-201ENST00000526939 192 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 SNORD95-201ENST00000579879 68 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC090616.1-201ENST00000583895 447 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC139493.1-201ENST00000604368 397 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AP000547.3-204ENST00000588548 2523 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL449283.1-201ENST00000602631 3403 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL136984.1-201ENST00000607611 1893 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC010624.4-201ENST00000597606 1351 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MIR1204-201ENST00000408388 67 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 GAS5-202ENST00000414075 413 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL590762.4-201ENST00000425885 253 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CDY8P-201ENST00000428380 1279 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CDY20P-201ENST00000447528 1279 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OR52I1-201ENST00000450052 1050 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 VN1R38P-201ENST00000450265 887 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OTX2-203ENST00000554559 715 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 FAM27E2-201ENST00000619668 403 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC239868.2-201ENST00000564237 4527 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 BX119321.1-201ENST00000428912 797 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MRO-208ENST00000588444 866 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC010333.3-201ENST00000615100 402 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC183089.2-201ENST00000637931 916 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms