Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.78□□□□□ -1.32
BDNFP23560 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
BDNFP23560 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
BDNFP23560 AC005332.9-201ENST00000620266 2921 ntBASIC6.78□□□□□ -1.32
BDNFP23560 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
BDNFP23560 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
BDNFP23560 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
BDNFP23560 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.77□□□□□ -1.32
BDNFP23560 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.77□□□□□ -1.32
BDNFP23560 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
BDNFP23560 AC073365.1-203ENST00000641055 1992 ntBASIC6.77□□□□□ -1.33
BDNFP23560 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
BDNFP23560 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
BDNFP23560 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 SNORD16-201ENST00000362803 99 ntBASIC6.77□□□□□ -1.33
BDNFP23560 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 MIR188-201ENST00000385034 86 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AL157702.1-201ENST00000398764 426 ntBASIC6.77□□□□□ -1.33
BDNFP23560 YWHAZP6-201ENST00000399764 738 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 RPL7AP14-201ENST00000424041 802 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.77□□□□□ -1.33
BDNFP23560 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 RPL31P20-201ENST00000449593 360 ntBASIC6.77□□□□□ -1.33
BDNFP23560 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 AC021006.1-201ENST00000489849 553 ntBASIC6.77□□□□□ -1.33
BDNFP23560 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 AC018797.1-201ENST00000510791 255 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 SNORA70.17-201ENST00000516449 133 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 AC107958.1-201ENST00000556576 290 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.77□□□□□ -1.33
BDNFP23560 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.77□□□□□ -1.33
BDNFP23560 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC6.77□□□□□ -1.33
BDNFP23560 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 GMCL1P2-201ENST00000605230 823 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AL135786.2-201ENST00000608422 615 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AL591926.1-201ENST00000620542 217 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AC002044.3-201ENST00000623314 541 ntBASIC6.77□□□□□ -1.33
BDNFP23560 AC025809.2-201ENST00000625085 1802 ntBASIC6.77□□□□□ -1.33
BDNFP23560 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 AC008957.3-201ENST00000624112 2242 ntBASIC6.77□□□□□ -1.33
BDNFP23560 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 AC093297.3-201ENST00000607056 2517 ntBASIC6.77□□□□□ -1.33
BDNFP23560 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.77□□□□□ -1.33
BDNFP23560 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.77□□□□□ -1.33
BDNFP23560 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.77□□□□□ -1.33
BDNFP23560 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
BDNFP23560 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 AC125238.2-201ENST00000430003 1440 ntBASIC6.76□□□□□ -1.33
BDNFP23560 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 AC005034.3-201ENST00000604845 1747 ntBASIC6.76□□□□□ -1.33
BDNFP23560 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 RNU6-819P-201ENST00000364116 107 ntBASIC6.76□□□□□ -1.33
BDNFP23560 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 OOSP1-201ENST00000398992 1270 ntBASIC6.76□□□□□ -1.33
BDNFP23560 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AC108479.1-201ENST00000431142 427 ntBASIC6.76□□□□□ -1.33
BDNFP23560 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AC093166.3-201ENST00000448785 303 ntBASIC6.76□□□□□ -1.33
BDNFP23560 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 RPL37P23-201ENST00000492641 294 ntBASIC6.76□□□□□ -1.33
BDNFP23560 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 AC122718.2-201ENST00000505325 591 ntBASIC6.76□□□□□ -1.33
BDNFP23560 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 HMGN1P17-201ENST00000513734 295 ntBASIC6.76□□□□□ -1.33
BDNFP23560 ZNF519P4-201ENST00000514008 125 ntBASIC6.76□□□□□ -1.33
BDNFP23560 SEC11B-201ENST00000518383 499 ntBASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 661.3 ms