Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
LIG1P18858 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.14
LIG1P18858 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
LIG1P18858 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC7.93□□□□□ -1.14
LIG1P18858 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 ZNF658B-201ENST00000602828 3408 ntBASIC7.93□□□□□ -1.14
LIG1P18858 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.93□□□□□ -1.14
LIG1P18858 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.93□□□□□ -1.14
LIG1P18858 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
LIG1P18858 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 Y_RNA.201-201ENST00000364052 96 ntBASIC7.93□□□□□ -1.14
LIG1P18858 RNU4-24P-201ENST00000364565 139 ntBASIC7.93□□□□□ -1.14
LIG1P18858 SNORA70.5-201ENST00000365519 135 ntBASIC7.93□□□□□ -1.14
LIG1P18858 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 BMS1P3-201ENST00000372011 932 ntBASIC7.93□□□□□ -1.14
LIG1P18858 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
LIG1P18858 NPM1P37-201ENST00000403105 874 ntBASIC7.93□□□□□ -1.14
LIG1P18858 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 AL139415.1-201ENST00000424862 352 ntBASIC7.93□□□□□ -1.14
LIG1P18858 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AL589823.1-201ENST00000429577 183 ntBASIC7.93□□□□□ -1.14
LIG1P18858 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC7.93□□□□□ -1.14
LIG1P18858 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC7.93□□□□□ -1.14
LIG1P18858 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC7.93□□□□□ -1.14
LIG1P18858 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC7.93□□□□□ -1.14
LIG1P18858 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AC135999.1-201ENST00000478962 479 ntBASIC7.93□□□□□ -1.14
LIG1P18858 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AC107401.1-201ENST00000503426 685 ntBASIC7.93□□□□□ -1.14
LIG1P18858 PCNAP1-201ENST00000505363 709 ntBASIC7.93□□□□□ -1.14
LIG1P18858 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AC118282.2-201ENST00000508739 374 ntBASIC7.93□□□□□ -1.14
LIG1P18858 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC7.93□□□□□ -1.14
LIG1P18858 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC7.93□□□□□ -1.14
LIG1P18858 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.93□□□□□ -1.14
LIG1P18858 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 AC018558.5-201ENST00000565840 952 ntBASIC7.93□□□□□ -1.14
LIG1P18858 RN7SL131P-201ENST00000579043 256 ntBASIC7.93□□□□□ -1.14
LIG1P18858 AC005244.1-201ENST00000582566 339 ntBASIC7.93□□□□□ -1.14
LIG1P18858 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC7.93□□□□□ -1.14
LIG1P18858 CCDC58P3-201ENST00000590792 430 ntBASIC7.93□□□□□ -1.14
LIG1P18858 AC122710.3-201ENST00000606566 541 ntBASIC7.93□□□□□ -1.14
LIG1P18858 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC7.93□□□□□ -1.14
LIG1P18858 OR7E161P-202ENST00000641994 1033 ntBASIC7.93□□□□□ -1.14
LIG1P18858 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 AC022905.1-201ENST00000503430 3048 ntBASIC7.93□□□□□ -1.14
LIG1P18858 EEF1A1P20-201ENST00000514852 1386 ntBASIC7.93□□□□□ -1.14
LIG1P18858 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
LIG1P18858 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 EEF1A1P16-201ENST00000325349 1414 ntBASIC7.93□□□□□ -1.14
LIG1P18858 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC7.93□□□□□ -1.14
LIG1P18858 AL591848.4-201ENST00000567832 3472 ntBASIC7.93□□□□□ -1.14
LIG1P18858 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
LIG1P18858 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
LIG1P18858 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
LIG1P18858 AC093278.2-201ENST00000564956 2485 ntBASIC7.92□□□□□ -1.14
LIG1P18858 RAD1P1-201ENST00000231383 813 ntBASIC7.92□□□□□ -1.14
LIG1P18858 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
LIG1P18858 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
LIG1P18858 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.92□□□□□ -1.14
LIG1P18858 RNU6-468P-201ENST00000384003 109 ntBASIC7.92□□□□□ -1.14
LIG1P18858 MIR27A-201ENST00000385073 78 ntBASIC7.92□□□□□ -1.14
LIG1P18858 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
LIG1P18858 AL157698.1-201ENST00000415190 1011 ntBASIC7.92□□□□□ -1.14
LIG1P18858 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC7.92□□□□□ -1.14
LIG1P18858 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC7.92□□□□□ -1.14
LIG1P18858 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC7.92□□□□□ -1.14
LIG1P18858 ANXA2P2-201ENST00000435128 1020 ntBASIC7.92□□□□□ -1.14
LIG1P18858 MTND2P21-201ENST00000436242 1042 ntBASIC7.92□□□□□ -1.14
LIG1P18858 RPS19P6-201ENST00000441327 433 ntBASIC7.92□□□□□ -1.14
LIG1P18858 HBG2-204ENST00000444587 307 ntTSL 2 BASIC7.92□□□□□ -1.14
LIG1P18858 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC7.92□□□□□ -1.14
LIG1P18858 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC7.92□□□□□ -1.14
LIG1P18858 PABPC1P10-201ENST00000464731 381 ntBASIC7.92□□□□□ -1.14
LIG1P18858 AP000805.1-201ENST00000471604 784 ntBASIC7.92□□□□□ -1.14
LIG1P18858 CREM-242ENST00000490511 469 ntTSL 2 BASIC7.92□□□□□ -1.14
LIG1P18858 MTND6P8-201ENST00000503471 522 ntBASIC7.92□□□□□ -1.14
LIG1P18858 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC7.92□□□□□ -1.14
LIG1P18858 OR5BM1P-201ENST00000512021 366 ntBASIC7.92□□□□□ -1.14
LIG1P18858 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC7.92□□□□□ -1.14
LIG1P18858 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC7.92□□□□□ -1.14
LIG1P18858 AP003084.1-201ENST00000524828 742 ntBASIC7.92□□□□□ -1.14
LIG1P18858 AP003717.3-201ENST00000544832 1180 ntBASIC7.92□□□□□ -1.14
LIG1P18858 AC023050.2-201ENST00000544968 387 ntBASIC7.92□□□□□ -1.14
LIG1P18858 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC7.92□□□□□ -1.14
LIG1P18858 AC093014.1-201ENST00000548926 724 ntBASIC7.92□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms