Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MIR99A-201ENST00000384906 81 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 MIR187-201ENST00000385062 109 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 MIR27A-201ENST00000385073 78 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 RPL11P3-201ENST00000395256 523 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 ZNF37CP-201ENST00000406795 241 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 AC009784.1-201ENST00000426484 460 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 OR52S1P-201ENST00000427016 937 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AC092646.1-201ENST00000427142 901 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC6.06□□□□□ -1.44
SHOX2O60902 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC6.06□□□□□ -1.44
SHOX2O60902 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC005165.2-201ENST00000466070 380 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 RN7SL836P-201ENST00000476140 296 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 MTCO1P55-201ENST00000489829 745 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.06□□□□□ -1.44
SHOX2O60902 CCDC11P1-201ENST00000503137 1162 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.06□□□□□ -1.44
SHOX2O60902 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 AC105202.1-203ENST00000518024 875 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 NPIPB14P-203ENST00000532298 987 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AC090424.1-201ENST00000535243 736 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.06□□□□□ -1.44
SHOX2O60902 AL078624.2-201ENST00000605063 554 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 FAM72A-208ENST00000607379 1139 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 AL121782.1-201ENST00000611242 413 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 AC005753.1-201ENST00000623837 618 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
SHOX2O60902 AC083899.1-201ENST00000454465 3819 ntBASIC6.06□□□□□ -1.44
SHOX2O60902 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHOX2O60902 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 AC006206.1-201ENST00000544842 3387 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SHOX2O60902 THAP12P9-201ENST00000503971 2360 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 SNORD35A-201ENST00000363389 86 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 SNORA70.6-201ENST00000383934 134 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SHOX2O60902 RAB5CP1-201ENST00000395972 580 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC6.05□□□□□ -1.44
SHOX2O60902 AC096632.2-201ENST00000438139 1239 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.05□□□□□ -1.44
SHOX2O60902 CYCSP51-201ENST00000443545 318 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 GAPDHP23-201ENST00000444823 993 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 AC010240.2-201ENST00000445363 1205 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC6.05□□□□□ -1.44
SHOX2O60902 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.05□□□□□ -1.44
SHOX2O60902 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC6.05□□□□□ -1.44
SHOX2O60902 IGKV2-4-201ENST00000523070 340 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 AL121594.2-201ENST00000541658 472 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.05□□□□□ -1.44
SHOX2O60902 RN7SL475P-201ENST00000583379 298 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 WDR45BP1-201ENST00000583470 1029 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 ACTG1P22-201ENST00000603793 1099 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 AC073046.2-201ENST00000604756 527 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC6.05□□□□□ -1.44
SHOX2O60902 TP53TG1_2.1-201ENST00000611226 182 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC6.05□□□□□ -1.44
SHOX2O60902 MRPL57P3-201ENST00000619218 176 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SHOX2O60902 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.05□□□□□ -1.44
SHOX2O60902 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 EEF1A1P28-201ENST00000450915 1403 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 AC007938.2-201ENST00000604666 2634 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.05□□□□□ -1.44
SHOX2O60902 AC005261.6-201ENST00000623072 1387 ntBASIC6.05□□□□□ -1.44
SHOX2O60902 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHOX2O60902 AC011755.1-201ENST00000623763 2049 ntBASIC6.04□□□□□ -1.44
SHOX2O60902 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms