Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS18P1-201ENST00000447840 458 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC112187.1-201ENST00000455837 479 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC083837.1-201ENST00000565297 2994 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC090286.3-201ENST00000573133 187 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 SNORA35B-201ENST00000607417 129 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC020656.2-201ENST00000613291 5309 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 ZNF101P1-201ENST00000435701 1720 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 HDAC1P2-201ENST00000453661 1398 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC096921.2-201ENST00000561507 1916 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 MTCO1P22-201ENST00000604619 1360 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 OR7E25P-201ENST00000344844 931 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 RNU11-6P-201ENST00000391127 133 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC245036.1-201ENST00000391727 309 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 NPM1P10-201ENST00000398310 865 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 CDC42P6-201ENST00000421246 576 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 VN1R53P-201ENST00000429536 957 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 MED28P4-201ENST00000433137 572 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 VPS25P1-201ENST00000455691 508 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 YRDCP3-201ENST00000456507 480 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC004890.1-201ENST00000461005 181 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 RPS7P11-201ENST00000484240 586 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC131392.1-201ENST00000506490 633 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC106800.3-201ENST00000511389 308 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 OR9G2P-201ENST00000533326 880 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 OR4A6P-201ENST00000534364 970 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC092865.1-201ENST00000544395 1023 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC138207.8-204ENST00000579588 527 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AL589863.1-201ENST00000595383 631 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 BNIP3P7-201ENST00000605641 516 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 MIR6085-201ENST00000618314 110 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC211486.4-201ENST00000621495 113 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC068213.1-201ENST00000625124 226 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 LINC02495-203ENST00000636704 242 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 AC090220.1-201ENST00000593078 1699 ntBASIC5.42□□□□□ -1.54
NKX3-1Q99801 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.42□□□□□ -1.54
NKX3-1Q99801 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NKX3-1Q99801 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC005702.3-201ENST00000585345 1447 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms