Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP002512.4-202ENST00000641599 4530 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC007159.1-201ENST00000566529 4706 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC011503.2-201ENST00000594230 1500 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC123769.1-201ENST00000530992 3192 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 RNA5SP485-201ENST00000365053 119 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 RNA5SP85-201ENST00000365378 119 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC007068.1-201ENST00000396690 844 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 ARSFP1-201ENST00000398758 477 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 RN7SKP121-201ENST00000410842 305 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 RPS26P38-201ENST00000414476 348 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC245884.2-201ENST00000426257 404 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 PSMD8P1-201ENST00000436275 769 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AL390879.1-201ENST00000439143 386 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC114324.2-202ENST00000503812 134 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 CYCSP25-201ENST00000525280 316 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC008055.1-201ENST00000547032 609 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 MIR4732-201ENST00000581873 76 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC026898.1-201ENST00000586404 571 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AL161912.3-201ENST00000605404 628 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC004890.3-201ENST00000605566 1095 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 OR7A1P-202ENST00000641542 1158 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 AL929601.4-201ENST00000613011 1341 ntBASIC6.19□□□□□ -1.42
VPS39Q96JC1 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
VPS39Q96JC1 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.19□□□□□ -1.42
VPS39Q96JC1 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 GTF2IP4-201ENST00000453092 2054 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AKAP17BP-201ENST00000431706 2719 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 VIM2P-201ENST00000402383 1294 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 COX4I1P2-201ENST00000447446 547 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 PPIAP32-201ENST00000449940 472 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 RAB28P2-201ENST00000454299 641 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 GM2AP2-201ENST00000491764 562 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 KHDC1P1-201ENST00000511053 508 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 BCAS2P1-201ENST00000528022 632 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 AP001858.2-201ENST00000536213 601 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms