Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC119674.1-202ENST00000641333 1860 ntBASIC6.21□□□□□ -1.42
VMP1Q96GC9 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.21□□□□□ -1.42
VMP1Q96GC9 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
VMP1Q96GC9 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
VMP1Q96GC9 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
VMP1Q96GC9 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.21□□□□□ -1.42
VMP1Q96GC9 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
VMP1Q96GC9 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
VMP1Q96GC9 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.21□□□□□ -1.42
VMP1Q96GC9 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC110373.1-201ENST00000505994 3505 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC019072.1-201ENST00000604535 1551 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 RNU6-1263P-201ENST00000384601 106 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AL929472.1-201ENST00000417484 429 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AL355994.1-201ENST00000424379 260 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 RPS18P1-201ENST00000447840 458 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 RN7SL561P-201ENST00000488553 281 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 SNORA58-201ENST00000505219 137 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 OR9G2P-201ENST00000533326 880 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC106785.4-201ENST00000569492 412 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 RPL29P33-201ENST00000587474 316 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC011921.2-201ENST00000589465 152 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC092944.2-201ENST00000605443 889 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AC093635.1-201ENST00000609028 555 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VMP1Q96GC9 AL355834.1-201ENST00000556602 3965 ntBASIC6.2□□□□□ -1.42
VMP1Q96GC9 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.2□□□□□ -1.42
VMP1Q96GC9 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VMP1Q96GC9 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VMP1Q96GC9 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VMP1Q96GC9 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-729P-201ENST00000384399 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-1320P-201ENST00000390838 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-1269P-201ENST00000391139 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 PEX12P1-201ENST00000400284 1048 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 AL049697.3-201ENST00000406493 982 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 UBTFL2-201ENST00000411859 1191 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VMP1Q96GC9 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 OR7L1P-201ENST00000456181 380 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-599P-201ENST00000459383 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-1193P-201ENST00000459461 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC015524.1-201ENST00000491585 472 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 NACAP5-201ENST00000509863 636 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC110056.1-201ENST00000525759 911 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 SNORD39.2-201ENST00000579995 76 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 MIR4732-201ENST00000581873 76 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC004241.2-201ENST00000614562 444 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-368P-201ENST00000620928 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 RNU6-538P-201ENST00000622329 107 ntBASIC6.19□□□□□ -1.42
VMP1Q96GC9 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.19□□□□□ -1.42
VMP1Q96GC9 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms