Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC095038.1-201ENST00000429248 1591 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC069154.1-201ENST00000432914 542 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 MYL6P3-201ENST00000436904 432 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 BX005266.3-201ENST00000443013 1075 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 RN7SL492P-201ENST00000460700 295 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC110749.1-201ENST00000462007 357 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 RN7SL187P-201ENST00000495587 303 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 SNX18P25-201ENST00000510539 758 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 RNU6-943P-201ENST00000516960 98 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 IGHV3-57-201ENST00000520143 280 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 SNRPGP1-201ENST00000553864 222 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC026458.1-201ENST00000564330 438 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 LINC00556-201ENST00000569603 412 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC002310.3-201ENST00000569728 723 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC011497.2-201ENST00000600255 639 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AL035410.2-201ENST00000604963 864 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC097467.4-201ENST00000605504 141 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC004908.1-201ENST00000606572 541 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AL354718.1-201ENST00000619764 589 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC012653.2-201ENST00000621880 420 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AC012254.5-201ENST00000623573 478 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 AL591135.1-201ENST00000401578 5914 ntBASIC5.44□□□□□ -1.54
PDLIM3Q53GG5 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC007842.1-201ENST00000597336 2039 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AL513548.1-201ENST00000562904 1724 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ATP5BP1-201ENST00000411980 1574 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 RNF19BPY-201ENST00000458209 1550 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AL356968.2-201ENST00000412769 1257 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 MTND4LP21-201ENST00000415303 295 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AL663061.1-201ENST00000416625 580 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 REREP1Y-201ENST00000422655 198 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 REREP2Y-201ENST00000439103 200 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 HBG2-204ENST00000444587 307 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC092824.1-201ENST00000483524 576 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 RN7SL104P-201ENST00000498686 293 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ST13P12-201ENST00000508958 1094 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC021146.10-201ENST00000515628 706 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 RN7SKP11-201ENST00000517018 287 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 IGLV3-6-201ENST00000523937 250 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 OR9G2P-201ENST00000533326 880 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 ACER3-213ENST00000533873 929 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC013244.1-201ENST00000604279 193 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 LSM1P2-201ENST00000604911 322 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC010998.3-201ENST00000613871 631 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AP001885.1-201ENST00000621658 558 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 AC008626.2-201ENST00000624425 248 ntBASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.43□□□□□ -1.54
PDLIM3Q53GG5 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms