Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.78□□□□□ -1.48
LIM2P55344 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 RPL23AP17-201ENST00000401064 499 ntBASIC5.78□□□□□ -1.48
LIM2P55344 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.78□□□□□ -1.48
LIM2P55344 RPS7P8-201ENST00000418311 581 ntBASIC5.78□□□□□ -1.48
LIM2P55344 RPL35AP31-201ENST00000418340 337 ntBASIC5.78□□□□□ -1.48
LIM2P55344 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.78□□□□□ -1.48
LIM2P55344 RPL34P27-201ENST00000428810 349 ntBASIC5.78□□□□□ -1.48
LIM2P55344 AL512593.1-201ENST00000444758 779 ntBASIC5.78□□□□□ -1.48
LIM2P55344 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 PPIAP7-201ENST00000454070 489 ntBASIC5.78□□□□□ -1.48
LIM2P55344 RAB28P2-201ENST00000454299 641 ntBASIC5.78□□□□□ -1.48
LIM2P55344 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.78□□□□□ -1.48
LIM2P55344 AC122718.2-201ENST00000505325 591 ntBASIC5.78□□□□□ -1.48
LIM2P55344 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.78□□□□□ -1.48
LIM2P55344 AP000620.1-201ENST00000527147 504 ntBASIC5.78□□□□□ -1.48
LIM2P55344 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 AC084121.1-201ENST00000533882 835 ntBASIC5.78□□□□□ -1.48
LIM2P55344 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.78□□□□□ -1.48
LIM2P55344 AP001157.1-201ENST00000550837 2339 ntBASIC5.78□□□□□ -1.48
LIM2P55344 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.78□□□□□ -1.48
LIM2P55344 AC023310.2-201ENST00000553844 547 ntBASIC5.78□□□□□ -1.48
LIM2P55344 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.78□□□□□ -1.48
LIM2P55344 AC092681.3-201ENST00000609463 678 ntBASIC5.78□□□□□ -1.48
LIM2P55344 AL512652.1-201ENST00000619006 500 ntBASIC5.78□□□□□ -1.48
LIM2P55344 FAM27E2-201ENST00000619668 403 ntBASIC5.78□□□□□ -1.48
LIM2P55344 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.78□□□□□ -1.48
LIM2P55344 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
LIM2P55344 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
LIM2P55344 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIM2P55344 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
LIM2P55344 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LIM2P55344 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 RNU1-134P-201ENST00000362935 165 ntBASIC5.77□□□□□ -1.49
LIM2P55344 RNU1-65P-201ENST00000363919 148 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AL132875.1-201ENST00000403623 949 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AL096829.1-201ENST00000413677 457 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.77□□□□□ -1.49
LIM2P55344 RPS15AP30-201ENST00000420976 390 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.77□□□□□ -1.49
LIM2P55344 AC023141.3-201ENST00000436698 278 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.77□□□□□ -1.49
LIM2P55344 SEPT14P12-201ENST00000442280 560 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AC068491.1-201ENST00000449539 1241 ntBASIC5.77□□□□□ -1.49
LIM2P55344 RPL23AP60-201ENST00000450011 454 ntBASIC5.77□□□□□ -1.49
LIM2P55344 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 AC009879.1-201ENST00000520029 839 ntBASIC5.77□□□□□ -1.49
LIM2P55344 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.77□□□□□ -1.49
LIM2P55344 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.77□□□□□ -1.49
LIM2P55344 AL845552.1-201ENST00000556820 323 ntBASIC5.77□□□□□ -1.49
LIM2P55344 AC007346.1-201ENST00000569208 867 ntBASIC5.77□□□□□ -1.49
LIM2P55344 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.77□□□□□ -1.49
LIM2P55344 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.77□□□□□ -1.49
LIM2P55344 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 AC073333.2-201ENST00000603589 769 ntBASIC5.77□□□□□ -1.49
LIM2P55344 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.77□□□□□ -1.49
LIM2P55344 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIM2P55344 AC022164.1-201ENST00000568767 2673 ntBASIC5.77□□□□□ -1.49
LIM2P55344 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LIM2P55344 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LIM2P55344 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.77□□□□□ -1.49
LIM2P55344 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms