Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ATP5LP4-201ENST00000434169 307 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA1P49639 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 PFN1P11-201ENST00000445829 389 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 RPL23AP28-201ENST00000448062 470 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 AC005165.2-201ENST00000466070 380 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 RPL7AP23-201ENST00000482625 776 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA1P49639 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXA1P49639 NPM1P27-201ENST00000502784 830 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 SNRPCP6-201ENST00000528310 210 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 OR4R2P-201ENST00000530815 597 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 PSMC1P8-201ENST00000536820 1296 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC025423.2-201ENST00000537570 439 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 AL136520.1-202ENST00000555494 763 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 PPIAP6-201ENST00000557078 499 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXA1P49639 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 BUB1P1-201ENST00000603541 607 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AL590032.1-201ENST00000604920 252 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC104117.5-201ENST00000606195 547 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 AL161931.1-201ENST00000612768 246 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 MIR6737-201ENST00000617385 70 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC005355.2-201ENST00000625064 484 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC103703.1-201ENST00000634783 663 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC140479.4-205ENST00000636339 820 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AC106858.1-201ENST00000637497 429 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 ZNF806-201ENST00000438300 1774 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.31□□□□□ -1.56
HOXA1P49639 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC100810.3-201ENST00000633189 2240 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 Y_RNA.62-201ENST00000362840 99 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 RPSAP44-201ENST00000406712 884 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 RN7SKP236-201ENST00000410635 284 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 RN7SKP268-201ENST00000411107 316 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 MYB-206ENST00000420123 1051 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 RPS27AP6-201ENST00000427962 448 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXA1P49639 RPL14P5-201ENST00000436474 730 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AC073072.2-201ENST00000447425 348 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 VN1R38P-201ENST00000450265 887 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC093719.1-201ENST00000480427 441 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXA1P49639 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC112184.1-201ENST00000505179 312 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 OR10D4P-201ENST00000525892 951 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC091304.4-201ENST00000565703 620 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AC027216.1-201ENST00000577726 685 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 COX6CP7-201ENST00000597056 208 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 VN1R81P-201ENST00000602085 372 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AL157899.1-201ENST00000604110 936 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXA1P49639 AC018558.4-201ENST00000622153 281 ntBASIC5.3□□□□□ -1.56
HOXA1P49639 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXA1P49639 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HOXA1P49639 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms