Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 AC008937.3-201ENST00000606813 1700 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.22□□□□□ -1.25
BRCA1P38398 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.22□□□□□ -1.25
BRCA1P38398 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.21□□□□□ -1.25
BRCA1P38398 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC7.21□□□□□ -1.25
BRCA1P38398 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
BRCA1P38398 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.21□□□□□ -1.25
BRCA1P38398 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC7.21□□□□□ -1.25
BRCA1P38398 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.21□□□□□ -1.25
BRCA1P38398 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.21□□□□□ -1.25
BRCA1P38398 PACRG-210ENST00000611387 279 ntTSL 5 BASIC7.21□□□□□ -1.25
BRCA1P38398 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.21□□□□□ -1.25
BRCA1P38398 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
BRCA1P38398 AC026951.1-201ENST00000559530 2459 ntBASIC7.21□□□□□ -1.25
BRCA1P38398 AL161912.4-201ENST00000623889 2468 ntBASIC7.21□□□□□ -1.25
BRCA1P38398 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
BRCA1P38398 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
BRCA1P38398 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.21□□□□□ -1.25
BRCA1P38398 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
BRCA1P38398 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC7.21□□□□□ -1.26
BRCA1P38398 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.21□□□□□ -1.26
BRCA1P38398 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
BRCA1P38398 MFSD8-218ENST00000641186 4448 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.21□□□□□ -1.26
BRCA1P38398 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
BRCA1P38398 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.21□□□□□ -1.26
BRCA1P38398 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
BRCA1P38398 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.26
BRCA1P38398 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC7.21□□□□□ -1.26
BRCA1P38398 OR10R3P-201ENST00000361688 942 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.21□□□□□ -1.26
BRCA1P38398 UBE2V1P14-201ENST00000415815 558 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 RPS26P13-201ENST00000419030 330 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 MORF4L1P5-201ENST00000433352 961 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 RPS11P7-201ENST00000442125 465 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.21□□□□□ -1.26
BRCA1P38398 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC7.21□□□□□ -1.26
BRCA1P38398 AP001922.4-201ENST00000526967 290 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.21□□□□□ -1.26
BRCA1P38398 AC139493.1-201ENST00000604368 397 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 AC091953.3-201ENST00000623220 236 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 AL390318.1-201ENST00000624564 687 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.21□□□□□ -1.26
BRCA1P38398 EEF1A1P24-201ENST00000451469 1378 ntBASIC7.21□□□□□ -1.26
BRCA1P38398 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
BRCA1P38398 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC7.21□□□□□ -1.26
BRCA1P38398 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
BRCA1P38398 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC7.2□□□□□ -1.26
BRCA1P38398 MFSD8-216ENST00000641147 4009 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 AC005839.1-201ENST00000624148 3213 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 RNA5SP333-201ENST00000363466 118 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 RNA5SP334-201ENST00000364825 118 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.2□□□□□ -1.26
BRCA1P38398 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.2□□□□□ -1.26
BRCA1P38398 AC006335.2-201ENST00000437993 330 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 AC099521.1-201ENST00000482557 334 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 PGAM1P13-201ENST00000507497 754 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 HNRNPCP1-201ENST00000556181 766 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 AC018552.1-201ENST00000562099 811 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 AL021368.3-201ENST00000607119 578 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 AL731566.2-201ENST00000618971 317 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC7.2□□□□□ -1.26
BRCA1P38398 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC7.2□□□□□ -1.26
BRCA1P38398 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC7.2□□□□□ -1.26
BRCA1P38398 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
BRCA1P38398 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms