Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC138866.2-201ENST00000508650 584 ntBASIC5.83□□□□□ -1.48
COL5A1P20908 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A1P20908 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.83□□□□□ -1.48
COL5A1P20908 OR4A40P-201ENST00000533878 948 ntBASIC5.83□□□□□ -1.48
COL5A1P20908 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.83□□□□□ -1.48
COL5A1P20908 AP001496.3-201ENST00000580230 913 ntBASIC5.83□□□□□ -1.48
COL5A1P20908 OR7A1P-201ENST00000601206 970 ntBASIC5.83□□□□□ -1.48
COL5A1P20908 AC079395.2-201ENST00000610982 737 ntBASIC5.83□□□□□ -1.48
COL5A1P20908 CU639417.4-201ENST00000623928 207 ntBASIC5.83□□□□□ -1.48
COL5A1P20908 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.83□□□□□ -1.48
COL5A1P20908 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
COL5A1P20908 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 AC011815.2-201ENST00000618230 2021 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 HDAC1P2-201ENST00000453661 1398 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.82□□□□□ -1.48
COL5A1P20908 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 RNA5SP251-201ENST00000410614 137 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 NPM1P4-201ENST00000414095 812 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC5.82□□□□□ -1.48
COL5A1P20908 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.82□□□□□ -1.48
COL5A1P20908 SIAH1P1-201ENST00000479411 923 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 NDUFA5P12-201ENST00000503796 343 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 RNA5SP400-201ENST00000517155 111 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.82□□□□□ -1.48
COL5A1P20908 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.82□□□□□ -1.48
COL5A1P20908 IMMP1LP3-201ENST00000604197 224 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 AC004808.2-201ENST00000627965 773 ntBASIC5.82□□□□□ -1.48
COL5A1P20908 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL5A1P20908 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A1P20908 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A1P20908 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.82□□□□□ -1.48
COL5A1P20908 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 FAM32BP-201ENST00000344033 333 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 RN7SKP77-201ENST00000363261 353 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 RNU11-6P-201ENST00000391127 133 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.81□□□□□ -1.48
COL5A1P20908 IGLV2-28-201ENST00000520681 304 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 DPPA2P4-201ENST00000563717 878 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC137695.1-201ENST00000604126 489 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 FAM27E4-201ENST00000605259 342 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 AL691477.1-201ENST00000624398 162 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 LINC01963-201ENST00000562038 3148 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC119674.1-213ENST00000641177 1386 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
COL5A1P20908 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 CR383656.5-201ENST00000547616 1340 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
COL5A1P20908 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A1P20908 RNA5SP234-201ENST00000363916 119 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 UBE2V1P14-201ENST00000415815 558 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A1P20908 AC126120.1-201ENST00000431082 470 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.81□□□□□ -1.48
COL5A1P20908 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A1P20908 OTX2P1-201ENST00000450956 354 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 YWHAEP1-201ENST00000453697 763 ntBASIC5.81□□□□□ -1.48
COL5A1P20908 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms