Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC7.32□□□□□ -1.24
COL6A1P12109 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 MIR7-1-201ENST00000384871 110 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 RPL5P5-201ENST00000392009 893 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 RN7SKP232-201ENST00000410170 290 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC244452.1-201ENST00000413798 141 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 AC106883.1-201ENST00000418805 562 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 BX510359.3-201ENST00000422168 306 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 RPS7P12-201ENST00000422385 582 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 RPL7AP14-201ENST00000424041 802 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 CYP4F32P-201ENST00000426492 504 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC245047.1-201ENST00000433276 873 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC7.32□□□□□ -1.24
COL6A1P12109 RPL5P9-201ENST00000448118 886 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC7.32□□□□□ -1.24
COL6A1P12109 RPL12P30-201ENST00000488389 499 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC7.32□□□□□ -1.24
COL6A1P12109 RPS10P20-201ENST00000494130 463 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC7.32□□□□□ -1.24
COL6A1P12109 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 SNORD46.2-201ENST00000516021 102 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC7.32□□□□□ -1.24
COL6A1P12109 AC113192.3-201ENST00000529152 742 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC091515.1-201ENST00000548110 679 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC7.32□□□□□ -1.24
COL6A1P12109 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC7.32□□□□□ -1.24
COL6A1P12109 NPIPB1P-202ENST00000588786 828 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 PLEKHA3P1-201ENST00000598554 894 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 QTRT1P1-201ENST00000604344 1078 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 U1.41-201ENST00000617626 165 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC127024.6-201ENST00000621598 424 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 PFKM-232ENST00000629846 381 ntTSL 4 BASIC7.32□□□□□ -1.24
COL6A1P12109 AC006453.5-201ENST00000636451 619 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 AC079776.5-201ENST00000641920 211 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC7.32□□□□□ -1.24
COL6A1P12109 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 AC130360.2-201ENST00000533477 1556 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL6A1P12109 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 EEF1A1P9-201ENST00000514975 1383 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 MTCO1P22-201ENST00000604619 1360 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 MTCO1P28-201ENST00000574177 1528 ntBASIC7.32□□□□□ -1.24
COL6A1P12109 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.32□□□□□ -1.24
COL6A1P12109 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 AL161901.1-201ENST00000624954 3425 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 CUBNP3-201ENST00000457461 1784 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 ZNF658B-201ENST00000602828 3408 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC7.31□□□□□ -1.24
COL6A1P12109 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC7.31□□□□□ -1.24
COL6A1P12109 AL359092.1-201ENST00000417156 265 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.31□□□□□ -1.24
COL6A1P12109 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC7.31□□□□□ -1.24
COL6A1P12109 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC7.31□□□□□ -1.24
COL6A1P12109 Z85994.2-201ENST00000434327 452 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 AC094019.1-201ENST00000434678 472 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 KRTAP2-5P-201ENST00000446109 396 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL6A1P12109 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC110749.1-201ENST00000462007 357 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 AC023194.2-201ENST00000465398 406 ntBASIC7.31□□□□□ -1.24
COL6A1P12109 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL6A1P12109 AC093827.1-201ENST00000480094 861 ntBASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms