Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 AC087633.2-202ENST00000565166 1439 ntBASIC17.19■□□□□ 0.34
NKX3-1Q99801 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.19■□□□□ 0.34
NKX3-1Q99801 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NKX3-1Q99801 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 AC016769.1-201ENST00000409132 1010 ntBASIC17.18■□□□□ 0.34
NKX3-1Q99801 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.18■□□□□ 0.34
NKX3-1Q99801 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
NKX3-1Q99801 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX3-1Q99801 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 AC137761.2-201ENST00000561729 223 ntBASIC17.17■□□□□ 0.34
NKX3-1Q99801 AC145350.3-201ENST00000569033 163 ntBASIC17.17■□□□□ 0.34
NKX3-1Q99801 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 PTBP1P-201ENST00000554374 1601 ntBASIC17.17■□□□□ 0.34
NKX3-1Q99801 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
NKX3-1Q99801 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX3-1Q99801 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 AC010536.3-201ENST00000620306 533 ntBASIC17.16■□□□□ 0.34
NKX3-1Q99801 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
NKX3-1Q99801 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX3-1Q99801 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
NKX3-1Q99801 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX3-1Q99801 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms