Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 AL031985.4-201ENST00000642138 673 ntBASIC19.28■□□□□ 0.68
LMX1AQ8TE12 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LMX1AQ8TE12 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LMX1AQ8TE12 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LMX1AQ8TE12 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.27■□□□□ 0.67
LMX1AQ8TE12 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.27■□□□□ 0.67
LMX1AQ8TE12 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 AIRN-201ENST00000601203 4374 ntBASIC19.26■□□□□ 0.67
LMX1AQ8TE12 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 KRT18P16-201ENST00000510337 1294 ntBASIC19.26■□□□□ 0.67
LMX1AQ8TE12 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.26■□□□□ 0.67
LMX1AQ8TE12 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 TMPOP1-202ENST00000424642 1267 ntBASIC19.25■□□□□ 0.67
LMX1AQ8TE12 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 NAPSB-206ENST00000562112 1266 ntBASIC19.25■□□□□ 0.67
LMX1AQ8TE12 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 AC145285.6-201ENST00000604632 637 ntBASIC19.25■□□□□ 0.67
LMX1AQ8TE12 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 AL445675.2-201ENST00000620291 557 ntBASIC19.25■□□□□ 0.67
LMX1AQ8TE12 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.25■□□□□ 0.67
LMX1AQ8TE12 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.24■□□□□ 0.67
LMX1AQ8TE12 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 LINC01568-207ENST00000641790 1380 ntBASIC19.24■□□□□ 0.67
LMX1AQ8TE12 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 FITM1-202ENST00000559294 800 ntBASIC19.24■□□□□ 0.67
LMX1AQ8TE12 AC005363.2-201ENST00000618631 242 ntBASIC19.24■□□□□ 0.67
LMX1AQ8TE12 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms