Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC010653.2-201ENST00000623505 997 ntBASIC21.07■□□□□ 0.96
CHD9Q3L8U1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.07■□□□□ 0.96
CHD9Q3L8U1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CHD9Q3L8U1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 AC141257.4-201ENST00000634557 245 ntBASIC21.06■□□□□ 0.96
CHD9Q3L8U1 AC136944.6-201ENST00000634818 245 ntBASIC21.06■□□□□ 0.96
CHD9Q3L8U1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 KRT18P38-201ENST00000449496 1282 ntBASIC21.06■□□□□ 0.96
CHD9Q3L8U1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 AC116562.4-202ENST00000641738 218 ntBASIC21.06■□□□□ 0.96
CHD9Q3L8U1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD9Q3L8U1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.05■□□□□ 0.96
CHD9Q3L8U1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 HOMER2P1-201ENST00000455653 964 ntBASIC21.05■□□□□ 0.96
CHD9Q3L8U1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 AC005229.4-201ENST00000610085 2198 ntBASIC21.05■□□□□ 0.96
CHD9Q3L8U1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 Z85996.1-201ENST00000494644 937 ntBASIC21.05■□□□□ 0.96
CHD9Q3L8U1 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 CR769767.2-201ENST00000622735 460 ntBASIC21.05■□□□□ 0.96
CHD9Q3L8U1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 KRT8P20-201ENST00000423953 1409 ntBASIC21.05■□□□□ 0.96
CHD9Q3L8U1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CHD9Q3L8U1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 AC242852.2-201ENST00000615738 1807 ntBASIC21.04■□□□□ 0.96
CHD9Q3L8U1 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 YBX1P10-201ENST00000444752 975 ntBASIC21.04■□□□□ 0.96
CHD9Q3L8U1 KRT17P6-201ENST00000453795 1220 ntBASIC21.04■□□□□ 0.96
CHD9Q3L8U1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 KRT8P45-201ENST00000414328 1447 ntBASIC21.04■□□□□ 0.96
CHD9Q3L8U1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 AL512604.3-201ENST00000569583 964 ntBASIC21.04■□□□□ 0.96
CHD9Q3L8U1 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.04■□□□□ 0.96
CHD9Q3L8U1 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 AC004951.3-201ENST00000418645 1148 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 AL024507.2-201ENST00000606070 2574 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 TFP1-202ENST00000475455 1573 ntBASIC21.03■□□□□ 0.96
CHD9Q3L8U1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD9Q3L8U1 SPDYE13P-201ENST00000445314 798 ntBASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms