Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.57■□□□□ 0.56
SOX3P41225 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 PRORSD1P-201ENST00000295112 541 ntBASIC18.56■□□□□ 0.56
SOX3P41225 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SOX3P41225 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 AC128676.1-201ENST00000454392 318 ntBASIC18.56■□□□□ 0.56
SOX3P41225 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.56■□□□□ 0.56
SOX3P41225 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.56■□□□□ 0.56
SOX3P41225 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.56■□□□□ 0.56
SOX3P41225 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.56■□□□□ 0.56
SOX3P41225 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 AC006557.6-201ENST00000623071 864 ntBASIC18.56■□□□□ 0.56
SOX3P41225 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX3P41225 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX3P41225 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SOX3P41225 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.55■□□□□ 0.56
SOX3P41225 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 AC099778.1-201ENST00000568593 1911 ntBASIC18.55■□□□□ 0.56
SOX3P41225 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX3P41225 AL390719.1-204ENST00000412397 1219 ntBASIC18.55■□□□□ 0.56
SOX3P41225 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.55■□□□□ 0.56
SOX3P41225 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX3P41225 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX3P41225 AC073648.6-201ENST00000641589 218 ntBASIC18.55■□□□□ 0.56
SOX3P41225 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SOX3P41225 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX3P41225 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.54■□□□□ 0.56
SOX3P41225 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.54■□□□□ 0.56
SOX3P41225 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.54■□□□□ 0.56
SOX3P41225 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 AC008687.6-201ENST00000596318 630 ntBASIC18.54■□□□□ 0.56
SOX3P41225 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.54■□□□□ 0.56
SOX3P41225 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX3P41225 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SOX3P41225 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SOX3P41225 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX3P41225 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX3P41225 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.53■□□□□ 0.56
SOX3P41225 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SOX3P41225 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.53■□□□□ 0.56
SOX3P41225 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms