Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
COL6A3P12111 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.78■□□□□ 0.92
COL6A3P12111 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A3P12111 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.78■□□□□ 0.92
COL6A3P12111 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A3P12111 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
COL6A3P12111 AP002414.4-201ENST00000589764 1148 ntBASIC20.78■□□□□ 0.92
COL6A3P12111 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A3P12111 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A3P12111 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.77■□□□□ 0.92
COL6A3P12111 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.77■□□□□ 0.92
COL6A3P12111 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.77■□□□□ 0.92
COL6A3P12111 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
COL6A3P12111 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
COL6A3P12111 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A3P12111 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A3P12111 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL6A3P12111 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.77■□□□□ 0.92
COL6A3P12111 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL6A3P12111 AP000523.1-201ENST00000398242 1049 ntBASIC20.77■□□□□ 0.92
COL6A3P12111 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A3P12111 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A3P12111 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.77■□□□□ 0.92
COL6A3P12111 AL121912.1-201ENST00000603683 238 ntBASIC20.77■□□□□ 0.92
COL6A3P12111 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
COL6A3P12111 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A3P12111 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL6A3P12111 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL6A3P12111 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.77■□□□□ 0.91
COL6A3P12111 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
COL6A3P12111 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL6A3P12111 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.77■□□□□ 0.91
COL6A3P12111 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.77■□□□□ 0.91
COL6A3P12111 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A3P12111 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A3P12111 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A3P12111 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.76■□□□□ 0.91
COL6A3P12111 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL6A3P12111 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A3P12111 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A3P12111 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.76■□□□□ 0.91
COL6A3P12111 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.76■□□□□ 0.91
COL6A3P12111 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.76■□□□□ 0.91
COL6A3P12111 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.76■□□□□ 0.91
COL6A3P12111 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 AP001160.2-201ENST00000596071 487 ntBASIC20.76■□□□□ 0.91
COL6A3P12111 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
COL6A3P12111 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A3P12111 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.76■□□□□ 0.91
COL6A3P12111 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A3P12111 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.75■□□□□ 0.91
COL6A3P12111 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A3P12111 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A3P12111 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A3P12111 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A3P12111 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A3P12111 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A3P12111 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A3P12111 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A3P12111 HBZP1-201ENST00000354915 429 ntBASIC20.75■□□□□ 0.91
COL6A3P12111 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL6A3P12111 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.75■□□□□ 0.91
COL6A3P12111 AC091304.2-201ENST00000564639 760 ntBASIC20.75■□□□□ 0.91
COL6A3P12111 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL6A3P12111 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A3P12111 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL6A3P12111 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL6A3P12111 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.75■□□□□ 0.91
COL6A3P12111 POLD2P1-201ENST00000511220 997 ntBASIC20.75■□□□□ 0.91
COL6A3P12111 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.75■□□□□ 0.91
COL6A3P12111 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
COL6A3P12111 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.74■□□□□ 0.91
COL6A3P12111 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A3P12111 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.74■□□□□ 0.91
COL6A3P12111 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A3P12111 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A3P12111 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
COL6A3P12111 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
COL6A3P12111 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.74■□□□□ 0.91
COL6A3P12111 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A3P12111 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A3P12111 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.73■□□□□ 0.91
COL6A3P12111 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL6A3P12111 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.73■□□□□ 0.91
COL6A3P12111 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms