Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TNFP01375 NUDT16P1-203ENST00000513809 620 ntBASIC19.34■□□□□ 0.69
TNFP01375 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.34■□□□□ 0.69
TNFP01375 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TNFP01375 LINC01023-201ENST00000606054 436 ntBASIC19.34■□□□□ 0.69
TNFP01375 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TNFP01375 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TNFP01375 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TNFP01375 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TNFP01375 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.34■□□□□ 0.69
TNFP01375 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TNFP01375 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TNFP01375 KRT16P1-201ENST00000399124 1418 ntBASIC19.34■□□□□ 0.69
TNFP01375 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TNFP01375 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.33■□□□□ 0.69
TNFP01375 BX119927.1-201ENST00000636596 1552 ntBASIC19.33■□□□□ 0.69
TNFP01375 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TNFP01375 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.33■□□□□ 0.68
TNFP01375 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.33■□□□□ 0.68
TNFP01375 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.33■□□□□ 0.68
TNFP01375 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.33■□□□□ 0.68
TNFP01375 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TNFP01375 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.33■□□□□ 0.68
TNFP01375 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TNFP01375 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TNFP01375 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.33■□□□□ 0.68
TNFP01375 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.33■□□□□ 0.68
TNFP01375 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TNFP01375 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TNFP01375 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.32■□□□□ 0.68
TNFP01375 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TNFP01375 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TNFP01375 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.32■□□□□ 0.68
TNFP01375 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TNFP01375 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.32■□□□□ 0.68
TNFP01375 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TNFP01375 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TNFP01375 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.32■□□□□ 0.68
TNFP01375 KRT18P16-201ENST00000510337 1294 ntBASIC19.32■□□□□ 0.68
TNFP01375 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.32■□□□□ 0.68
TNFP01375 C1QL1P1-201ENST00000568105 661 ntBASIC19.32■□□□□ 0.68
TNFP01375 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.32■□□□□ 0.68
TNFP01375 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.32■□□□□ 0.68
TNFP01375 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.32■□□□□ 0.68
TNFP01375 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TNFP01375 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TNFP01375 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TNFP01375 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.31■□□□□ 0.68
TNFP01375 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TNFP01375 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.31■□□□□ 0.68
TNFP01375 AC087499.1-201ENST00000418141 1075 ntBASIC19.31■□□□□ 0.68
TNFP01375 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.31■□□□□ 0.68
TNFP01375 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.31■□□□□ 0.68
TNFP01375 AC133561.5-201ENST00000635547 218 ntBASIC19.31■□□□□ 0.68
TNFP01375 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TNFP01375 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TNFP01375 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.31■□□□□ 0.68
TNFP01375 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.31■□□□□ 0.68
TNFP01375 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 AL137060.1-201ENST00000618151 2648 ntBASIC19.3■□□□□ 0.68
TNFP01375 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TNFP01375 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 MMP23A-201ENST00000234610 1017 ntBASIC19.3■□□□□ 0.68
TNFP01375 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.3■□□□□ 0.68
TNFP01375 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.3■□□□□ 0.68
TNFP01375 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
TNFP01375 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TNFP01375 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.3■□□□□ 0.68
TNFP01375 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
TNFP01375 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.3■□□□□ 0.68
TNFP01375 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TNFP01375 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TNFP01375 UNC93B2-201ENST00000285383 730 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms