Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SNORA43.1-201ENST00000364863 140 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AL096800.1-201ENST00000405326 893 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 VN1R96P-201ENST00000446052 858 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AC073594.1-201ENST00000462065 364 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 RPL29P23-201ENST00000486188 442 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 GUSBP9-201ENST00000510138 584 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AC069234.4-201ENST00000621276 412 ntBASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.39□□□□□ -1.39
PCDH9Q9HC56 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC137056.2-201ENST00000624055 1958 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC121334.1-201ENST00000396414 802 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 POU5F1P5-201ENST00000445059 658 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 RN7SL326P-201ENST00000477493 296 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC138207.8-204ENST00000579588 527 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC244100.4-201ENST00000617747 388 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC048341.3-201ENST00000619323 491 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC010325.3-201ENST00000641084 394 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 OR7A1P-202ENST00000641542 1158 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AL049634.1-201ENST00000453770 1720 ntBASIC6.38□□□□□ -1.39
PCDH9Q9HC56 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PCDH9Q9HC56 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AP000547.3-204ENST00000588548 2523 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AL157702.1-201ENST00000398764 426 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 MTND2P12-201ENST00000417560 1252 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 RPS7P14-201ENST00000426405 583 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AC112492.2-201ENST00000432774 1030 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 CXCR2P1-202ENST00000443392 1074 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AC097359.1-201ENST00000447946 463 ntBASIC6.37□□□□□ -1.39
PCDH9Q9HC56 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC6.37□□□□□ -1.39
PCDH9Q9HC56 H3F3AP5-201ENST00000475267 429 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms