Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 MIR585-201ENST00000384887 94 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AP000534.2-201ENST00000412729 568 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC006455.6-201ENST00000426192 893 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 CCNB1IP1P1-201ENST00000428976 839 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC004815.1-201ENST00000484185 331 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 SNORA43.3-201ENST00000517240 103 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 EIF4A2P5-201ENST00000529914 499 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 OR7A11P-201ENST00000597719 953 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 MIR6748-201ENST00000610433 71 ntBASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ATM-229ENST00000639953 587 ntTSL 5 BASIC9.14□□□□□ -0.95
SCAPERQ9BY12 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 RPL36P18-201ENST00000419316 318 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 RPS27P18-201ENST00000431701 247 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 RN7SL860P-201ENST00000473738 223 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AC109481.1-201ENST00000509173 282 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 RNA5SP92-201ENST00000516437 110 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 MINCR-206ENST00000524335 499 ntTSL 2 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 APPL2-203ENST00000546731 684 ntTSL 2 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 RNU4ATAC-201ENST00000580972 127 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AL031651.1-201ENST00000615357 1438 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 AC022919.1-201ENST00000624979 626 ntBASIC9.13□□□□□ -0.95
SCAPERQ9BY12 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC9.13□□□□□ -0.95
SCAPERQ9BY12 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AP003119.3-201ENST00000566747 4192 ntBASIC9.12□□□□□ -0.95
SCAPERQ9BY12 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 SNRPEP6-201ENST00000407465 277 ntBASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 IGLV3-30-201ENST00000524362 298 ntBASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 MIR3189-201ENST00000578735 73 ntBASIC9.12□□□□□ -0.95
SCAPERQ9BY12 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 HCG18-243ENST00000602498 327 ntTSL 3 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 AC021766.1-201ENST00000624404 741 ntBASIC9.12□□□□□ -0.95
SCAPERQ9BY12 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 SELE-203ENST00000367775 3389 ntTSL 5 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SCAPERQ9BY12 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 CREM-217ENST00000439705 2306 ntTSL 5 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 MIR1286-201ENST00000408112 78 ntBASIC9.11□□□□□ -0.95
SCAPERQ9BY12 MRPL53P1-201ENST00000414323 319 ntBASIC9.11□□□□□ -0.95
SCAPERQ9BY12 OR6E1P-201ENST00000414424 923 ntBASIC9.11□□□□□ -0.95
SCAPERQ9BY12 UBE2V1P14-201ENST00000415815 558 ntBASIC9.11□□□□□ -0.95
SCAPERQ9BY12 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC9.11□□□□□ -0.95
SCAPERQ9BY12 FMO7P-201ENST00000436045 768 ntBASIC9.11□□□□□ -0.95
SCAPERQ9BY12 AC005532.2-201ENST00000467154 373 ntBASIC9.11□□□□□ -0.95
SCAPERQ9BY12 RPS17P15-201ENST00000475609 349 ntBASIC9.11□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms