Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU4ATAC2P-201ENST00000408674 126 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 NRBF2P2-201ENST00000413087 861 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC008072.1-201ENST00000434254 824 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC105749.1-201ENST00000631338 2008 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC119674.1-204ENST00000641348 1343 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 RNA5SP505-201ENST00000364748 108 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 CYP4F30P-202ENST00000420048 405 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 SDC4P-201ENST00000453285 601 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC092824.1-201ENST00000483524 576 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC083982.1-201ENST00000485679 344 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC100784.1-201ENST00000522790 310 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AL359922.2-201ENST00000581788 3017 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 RN7SKP23-201ENST00000625159 4301 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 CUBNP2-201ENST00000443534 1139 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 RPL7L1P11-201ENST00000446092 721 ntBASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 ZNF592-203ENST00000560079 8131 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 EPS15P1-202ENST00000459691 2071 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 TNFSF15-202ENST00000374045 6687 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RPL23P2-201ENST00000320371 421 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RN7SL354P-201ENST00000469282 294 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AC073610.1-201ENST00000489971 396 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RN7SL205P-201ENST00000490174 284 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RN7SL52P-201ENST00000584271 284 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RN7SL722P-201ENST00000617780 284 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RN7SL565P-201ENST00000618246 284 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 ARHGAP42P4-201ENST00000549782 2934 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 CACNB2-209ENST00000396576 4464 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 ABCA8-203ENST00000430352 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 COL6A4P1-202ENST00000487147 4317 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 BCL9-201ENST00000234739 6278 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RNU4-4P-201ENST00000364588 130 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AL133173.1-201ENST00000423458 397 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AC016712.1-201ENST00000431088 378 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AC104164.1-201ENST00000460282 590 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 OR5AN2P-201ENST00000534535 896 ntBASIC5.72□□□□□ -1.49
VPS13AQ96RL7 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 LYRM1-204ENST00000439021 1558 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS13AQ96RL7 PART1-201ENST00000504876 5616 ntTSL 2 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms