Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
CCDC88AQ3V6T2 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC88AQ3V6T2 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 AL355032.1-201ENST00000472981 438 ntBASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 AC073581.1-201ENST00000519036 575 ntBASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 AL691477.1-201ENST00000624398 162 ntBASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC88AQ3V6T2 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 NMD3P2-201ENST00000421815 761 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 RN7SKP98-201ENST00000517070 156 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AL021368.3-201ENST00000607119 578 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AL137246.2-201ENST00000613439 662 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AL139407.1-201ENST00000613826 1175 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 CU639417.4-201ENST00000623928 207 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 RN7SKP77-201ENST00000363261 353 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC097721.1-201ENST00000427150 1253 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC126120.1-201ENST00000431082 470 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC009237.1-201ENST00000442127 744 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC011742.2-201ENST00000443818 352 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 TCL6_3.1-201ENST00000619064 137 ntBASIC7.45□□□□□ -1.22
CCDC88AQ3V6T2 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC105235.1-201ENST00000623208 1816 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC006058.1-201ENST00000568686 5067 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AL139415.1-201ENST00000424862 352 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AL390119.1-201ENST00000440329 312 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC016027.4-201ENST00000450866 277 ntBASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 APPL2-203ENST00000546731 684 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC88AQ3V6T2 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms