Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OARD1-211ENST00000480585 829 ntTSL 3 BASIC9.93□□□□□ -0.82
CUX1P39880 RPL32P33-201ENST00000487023 394 ntBASIC9.93□□□□□ -0.82
CUX1P39880 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC9.93□□□□□ -0.82
CUX1P39880 HSPE1P2-201ENST00000554777 306 ntBASIC9.93□□□□□ -0.82
CUX1P39880 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC9.93□□□□□ -0.82
CUX1P39880 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC9.93□□□□□ -0.82
CUX1P39880 GARSP1-201ENST00000570895 719 ntBASIC9.93□□□□□ -0.82
CUX1P39880 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC9.93□□□□□ -0.82
CUX1P39880 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC9.93□□□□□ -0.82
CUX1P39880 AC013731.1-201ENST00000604340 883 ntBASIC9.93□□□□□ -0.82
CUX1P39880 AL139099.4-201ENST00000614802 114 ntBASIC9.93□□□□□ -0.82
CUX1P39880 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CUX1P39880 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CUX1P39880 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CUX1P39880 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CUX1P39880 AC105749.1-201ENST00000631338 2008 ntBASIC9.93□□□□□ -0.82
CUX1P39880 RNA5SP131-201ENST00000365452 119 ntBASIC9.92□□□□□ -0.82
CUX1P39880 MRM2-202ENST00000407040 582 ntTSL 3 BASIC9.92□□□□□ -0.82
CUX1P39880 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC9.92□□□□□ -0.82
CUX1P39880 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC9.92□□□□□ -0.82
CUX1P39880 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC9.92□□□□□ -0.82
CUX1P39880 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC9.92□□□□□ -0.82
CUX1P39880 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC9.92□□□□□ -0.82
CUX1P39880 RN7SL860P-201ENST00000473738 223 ntBASIC9.92□□□□□ -0.82
CUX1P39880 OR5M14P-201ENST00000506803 618 ntBASIC9.92□□□□□ -0.82
CUX1P39880 HIGD1AP14-201ENST00000507617 282 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 AC005840.5-201ENST00000619166 599 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AC136428.4-201ENST00000634254 1155 ntBASIC9.92□□□□□ -0.82
CUX1P39880 METTL15-211ENST00000634762 718 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
CUX1P39880 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC9.92□□□□□ -0.82
CUX1P39880 AL161756.3-201ENST00000641216 2071 ntBASIC9.92□□□□□ -0.82
CUX1P39880 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CUX1P39880 TPT1-204ENST00000379060 764 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 MIR585-201ENST00000384887 94 ntBASIC9.92□□□□□ -0.82
CUX1P39880 RN7SKP216-201ENST00000411050 312 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AP000534.2-201ENST00000412729 568 ntBASIC9.92□□□□□ -0.82
CUX1P39880 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC9.92□□□□□ -0.82
CUX1P39880 NIPA2P1-201ENST00000426223 976 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AL139148.1-201ENST00000427122 680 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AL663074.2-201ENST00000440621 479 ntBASIC9.92□□□□□ -0.82
CUX1P39880 RPS26P41-201ENST00000450370 284 ntBASIC9.92□□□□□ -0.82
CUX1P39880 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 RN7SL583P-201ENST00000475692 287 ntBASIC9.92□□□□□ -0.82
CUX1P39880 RPL38P3-201ENST00000484463 213 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC9.92□□□□□ -0.82
CUX1P39880 OR8G3P-201ENST00000533406 921 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC9.92□□□□□ -0.82
CUX1P39880 AC145423.1-201ENST00000605712 336 ntBASIC9.92□□□□□ -0.82
CUX1P39880 AC021766.1-201ENST00000624404 741 ntBASIC9.92□□□□□ -0.82
CUX1P39880 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 AC127070.3-201ENST00000503695 3263 ntBASIC9.91□□□□□ -0.82
CUX1P39880 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 AC008937.3-201ENST00000606813 1700 ntBASIC9.91□□□□□ -0.82
CUX1P39880 CYP4Z2P-201ENST00000423332 1512 ntBASIC9.91□□□□□ -0.82
CUX1P39880 CR383656.5-201ENST00000547616 1340 ntBASIC9.91□□□□□ -0.82
CUX1P39880 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 AL159987.1-201ENST00000347911 293 ntBASIC9.91□□□□□ -0.82
CUX1P39880 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC9.91□□□□□ -0.82
CUX1P39880 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC9.91□□□□□ -0.82
CUX1P39880 AC006455.6-201ENST00000426192 893 ntBASIC9.91□□□□□ -0.82
CUX1P39880 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC9.91□□□□□ -0.82
CUX1P39880 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
CUX1P39880 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC9.91□□□□□ -0.82
CUX1P39880 SUGT1P3-202ENST00000604259 383 ntBASIC9.91□□□□□ -0.82
CUX1P39880 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms