Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 OR7E158P-201ENST00000524483 910 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.24□□□□□ -1.25
BRCA1P38398 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
BRCA1P38398 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
BRCA1P38398 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
BRCA1P38398 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
BRCA1P38398 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC7.24□□□□□ -1.25
BRCA1P38398 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
BRCA1P38398 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
BRCA1P38398 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
BRCA1P38398 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
BRCA1P38398 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.24□□□□□ -1.25
BRCA1P38398 AL139128.1-201ENST00000413921 941 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 PRUNEP1-201ENST00000425846 705 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 FTH1P10-202ENST00000430907 550 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 RPL7P61-201ENST00000451721 751 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC7.24□□□□□ -1.25
BRCA1P38398 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.24□□□□□ -1.25
BRCA1P38398 MIR6837-201ENST00000620884 64 ntBASIC7.24□□□□□ -1.25
BRCA1P38398 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.24□□□□□ -1.25
BRCA1P38398 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 FO082842.1-201ENST00000423552 1370 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.23□□□□□ -1.25
BRCA1P38398 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 EML5-201ENST00000380664 5910 ntTSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 AC009120.2-204ENST00000621548 2032 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
BRCA1P38398 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.23□□□□□ -1.25
BRCA1P38398 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
BRCA1P38398 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.23□□□□□ -1.25
BRCA1P38398 FAR2P2-201ENST00000413041 594 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC7.23□□□□□ -1.25
BRCA1P38398 RPS4XP5-201ENST00000419038 768 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 AC108075.1-201ENST00000424692 529 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 FAR2P4-202ENST00000425399 584 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 RPS7P3-201ENST00000443360 580 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.23□□□□□ -1.25
BRCA1P38398 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC7.23□□□□□ -1.25
BRCA1P38398 RN7SL97P-201ENST00000486780 299 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 RPL15P21-201ENST00000495592 567 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 AL671862.1-201ENST00000515851 349 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.23□□□□□ -1.25
BRCA1P38398 OR56A7P-201ENST00000524865 941 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 OR1F2P-201ENST00000570470 933 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC7.23□□□□□ -1.25
BRCA1P38398 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
BRCA1P38398 OR7E25P-202ENST00000641088 5937 ntBASIC7.23□□□□□ -1.25
BRCA1P38398 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 AC112255.1-201ENST00000624070 2493 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 AC011379.1-201ENST00000508713 3025 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
BRCA1P38398 AL359091.1-201ENST00000449048 1734 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 MAPK10-304ENST00000641341 3984 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
BRCA1P38398 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
BRCA1P38398 RAB28P1-201ENST00000411517 641 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.22□□□□□ -1.25
BRCA1P38398 AC099677.3-201ENST00000427081 395 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC7.22□□□□□ -1.25
BRCA1P38398 AL663074.2-201ENST00000440621 479 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AC083795.1-201ENST00000491760 320 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AC009120.1-201ENST00000493458 473 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC7.22□□□□□ -1.25
BRCA1P38398 AP000662.1-201ENST00000530952 487 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.22□□□□□ -1.25
BRCA1P38398 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.22□□□□□ -1.25
BRCA1P38398 RN7SL371P-201ENST00000578099 267 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 OR7A11P-201ENST00000597719 953 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AC100827.5-201ENST00000615883 426 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AP002505.2-201ENST00000623585 696 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 AC027348.2-201ENST00000624375 642 ntBASIC7.22□□□□□ -1.25
BRCA1P38398 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
BRCA1P38398 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
BRCA1P38398 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms