Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 YWHAZP2-201ENST00000440317 728 ntBASIC7.45□□□□□ -1.22
MSX1P28360 BMS1P10-201ENST00000443754 1120 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC097499.1-201ENST00000444277 208 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC239367.2-201ENST00000447309 705 ntBASIC7.45□□□□□ -1.22
MSX1P28360 RHEBP1-201ENST00000448647 556 ntBASIC7.45□□□□□ -1.22
MSX1P28360 ATP5G1P6-201ENST00000451206 412 ntBASIC7.45□□□□□ -1.22
MSX1P28360 TXNP3-201ENST00000454560 301 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC7.45□□□□□ -1.22
MSX1P28360 AC090589.1-201ENST00000473109 362 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AP002884.1-201ENST00000479691 655 ntBASIC7.45□□□□□ -1.22
MSX1P28360 RPS7P6-201ENST00000485777 579 ntBASIC7.45□□□□□ -1.22
MSX1P28360 DLX5-202ENST00000486603 1074 ntTSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 AC113208.1-201ENST00000497944 318 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC073648.3-201ENST00000504939 925 ntBASIC7.45□□□□□ -1.22
MSX1P28360 HMGN1P13-201ENST00000505795 138 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC024451.1-201ENST00000508013 779 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC7.45□□□□□ -1.22
MSX1P28360 AC034206.1-201ENST00000509372 474 ntTSL 3 BASIC7.45□□□□□ -1.22
MSX1P28360 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 AK6-204ENST00000512561 587 ntTSL 5 BASIC7.45□□□□□ -1.22
MSX1P28360 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 FAM92A1P1-201ENST00000528023 890 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC090707.1-201ENST00000528795 396 ntTSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC7.45□□□□□ -1.22
MSX1P28360 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC7.45□□□□□ -1.22
MSX1P28360 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC7.45□□□□□ -1.22
MSX1P28360 DSG1-AS1-204ENST00000581856 669 ntTSL 3 BASIC7.45□□□□□ -1.22
MSX1P28360 MIR4637-201ENST00000582405 84 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AL158151.4-201ENST00000600965 507 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AL031429.2-201ENST00000602605 649 ntBASIC7.45□□□□□ -1.22
MSX1P28360 MTCO2P22-201ENST00000603246 681 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC016405.2-201ENST00000607393 312 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC019193.2-201ENST00000610012 634 ntBASIC7.45□□□□□ -1.22
MSX1P28360 RN7SL301P-202ENST00000618767 298 ntBASIC7.45□□□□□ -1.22
MSX1P28360 MED15P6-202ENST00000621415 787 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AC079456.1-201ENST00000624010 480 ntBASIC7.45□□□□□ -1.22
MSX1P28360 AL136967.1-201ENST00000625120 441 ntBASIC7.45□□□□□ -1.22
MSX1P28360 VAMP3-201ENST00000054666 2205 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
MSX1P28360 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 BRCA1-208ENST00000468300 3273 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
MSX1P28360 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
MSX1P28360 OR4P4-202ENST00000641760 2086 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
MSX1P28360 LINC02159-202ENST00000518580 2323 ntTSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 TCF4-203ENST00000398339 2551 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
MSX1P28360 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
MSX1P28360 AL669831.5-218ENST00000591702 1873 ntBASIC7.45□□□□□ -1.22
MSX1P28360 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
MSX1P28360 SOSTDC1-202ENST00000396652 2411 ntTSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 BRD7P1-201ENST00000557705 1915 ntBASIC7.44□□□□□ -1.22
MSX1P28360 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 NBPF25P-201ENST00000606775 2019 ntBASIC7.44□□□□□ -1.22
MSX1P28360 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 ERGIC1-201ENST00000326654 3952 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 MAPK10-252ENST00000640970 2620 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC7.44□□□□□ -1.22
MSX1P28360 ACOT13-203ENST00000537591 4391 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 OCM-201ENST00000242104 695 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 OR9K2-201ENST00000305377 1122 ntBASIC7.44□□□□□ -1.22
MSX1P28360 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 OR7A17-201ENST00000327462 1127 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
MSX1P28360 OR11H13P-201ENST00000359695 979 ntBASIC7.44□□□□□ -1.22
MSX1P28360 IGBP1-AS1-201ENST00000366397 542 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 MIR142-201ENST00000384835 87 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AURKA-205ENST00000395911 2145 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 IGLC6-201ENST00000410078 317 ntBASIC7.44□□□□□ -1.22
MSX1P28360 RPL17P12-201ENST00000413391 526 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC003080.1-201ENST00000413552 767 ntBASIC7.44□□□□□ -1.22
MSX1P28360 RPS26P13-201ENST00000419030 330 ntBASIC7.44□□□□□ -1.22
MSX1P28360 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 AL445430.2-201ENST00000423149 686 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC7.44□□□□□ -1.22
MSX1P28360 AL356387.1-201ENST00000426321 476 ntTSL 3 BASIC7.44□□□□□ -1.22
MSX1P28360 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC7.44□□□□□ -1.22
MSX1P28360 HSPD1P12-201ENST00000429127 1069 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AL365184.2-201ENST00000431139 435 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC069154.1-201ENST00000432914 542 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 ACTP1-201ENST00000440793 383 ntBASIC7.44□□□□□ -1.22
MSX1P28360 PCNPP2-201ENST00000441651 455 ntBASIC7.44□□□□□ -1.22
MSX1P28360 OR7H1P-201ENST00000448965 922 ntBASIC7.44□□□□□ -1.22
MSX1P28360 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
MSX1P28360 RPL30P9-201ENST00000465586 330 ntBASIC7.44□□□□□ -1.22
MSX1P28360 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC7.44□□□□□ -1.22
MSX1P28360 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC7.44□□□□□ -1.22
MSX1P28360 AC109811.2-201ENST00000509609 452 ntBASIC7.44□□□□□ -1.22
MSX1P28360 ATG10-208ENST00000513634 618 ntTSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 RNU7-179P-201ENST00000516608 68 ntBASIC7.44□□□□□ -1.22
MSX1P28360 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 PPP1R1AP1-201ENST00000525622 425 ntBASIC7.44□□□□□ -1.22
MSX1P28360 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC7.44□□□□□ -1.22
MSX1P28360 AC006065.2-201ENST00000536978 211 ntBASIC7.44□□□□□ -1.22
MSX1P28360 PSMA6-202ENST00000540871 912 ntTSL 2 BASIC7.44□□□□□ -1.22
MSX1P28360 TSPAN8-203ENST00000546561 1168 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms