Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
COL3A1P02461 AL360271.1-201ENST00000395679 510 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 CHEK2P5-201ENST00000423877 246 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
COL3A1P02461 SETP20-201ENST00000457046 852 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 SLC25A51P1-201ENST00000468432 871 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 AC083795.1-201ENST00000491760 320 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 FTH1P8-201ENST00000498161 514 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.86□□□□□ -1.15
COL3A1P02461 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.86□□□□□ -1.15
COL3A1P02461 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC7.86□□□□□ -1.15
COL3A1P02461 CASP5-209ENST00000531367 879 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 AC090424.1-201ENST00000535243 736 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC7.86□□□□□ -1.15
COL3A1P02461 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.86□□□□□ -1.15
COL3A1P02461 AC103798.2-201ENST00000624292 632 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 ATM-229ENST00000639953 587 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 OR8G3P-202ENST00000641572 1255 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 CASC19-243ENST00000641588 1546 ntBASIC7.86□□□□□ -1.15
COL3A1P02461 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC7.86□□□□□ -1.15
COL3A1P02461 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL3A1P02461 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC7.85□□□□□ -1.15
COL3A1P02461 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.85□□□□□ -1.15
COL3A1P02461 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.85□□□□□ -1.15
COL3A1P02461 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.85□□□□□ -1.15
COL3A1P02461 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.85□□□□□ -1.15
COL3A1P02461 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC7.85□□□□□ -1.15
COL3A1P02461 ZSCAN12P1-201ENST00000406489 419 ntBASIC7.85□□□□□ -1.15
COL3A1P02461 MRPL53P1-201ENST00000414323 319 ntBASIC7.85□□□□□ -1.15
COL3A1P02461 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC7.85□□□□□ -1.15
COL3A1P02461 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
COL3A1P02461 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC7.85□□□□□ -1.15
COL3A1P02461 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.85□□□□□ -1.15
COL3A1P02461 OR4A42P-201ENST00000531397 938 ntBASIC7.85□□□□□ -1.15
COL3A1P02461 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC7.85□□□□□ -1.15
COL3A1P02461 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC7.85□□□□□ -1.15
COL3A1P02461 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC7.85□□□□□ -1.15
COL3A1P02461 AC009237.12-201ENST00000604755 742 ntBASIC7.85□□□□□ -1.15
COL3A1P02461 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL3A1P02461 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.85□□□□□ -1.15
COL3A1P02461 AC015689.2-201ENST00000528172 1738 ntBASIC7.85□□□□□ -1.15
COL3A1P02461 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
COL3A1P02461 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.84□□□□□ -1.15
COL3A1P02461 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.15
COL3A1P02461 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 AC104581.5-201ENST00000624171 7141 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.84□□□□□ -1.15
COL3A1P02461 FUNDC2P3-201ENST00000334716 533 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 AC023490.2-201ENST00000359859 470 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 AL357752.1-201ENST00000412817 349 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 AK4P4-201ENST00000419465 646 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 RPSAP37-201ENST00000470913 821 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC7.84□□□□□ -1.15
COL3A1P02461 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 RPS3AP15-201ENST00000483874 781 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.84□□□□□ -1.15
COL3A1P02461 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.84□□□□□ -1.15
COL3A1P02461 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC7.84□□□□□ -1.15
COL3A1P02461 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC7.84□□□□□ -1.15
COL3A1P02461 WBP1LP3-201ENST00000523033 208 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 AL137246.2-201ENST00000613439 662 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 AC107308.1-201ENST00000615897 301 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
COL3A1P02461 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL3A1P02461 WBP11P1-201ENST00000562560 1931 ntBASIC7.84□□□□□ -1.15
COL3A1P02461 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
COL3A1P02461 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
COL3A1P02461 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.83□□□□□ -1.16
COL3A1P02461 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC7.83□□□□□ -1.16
COL3A1P02461 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.83□□□□□ -1.16
COL3A1P02461 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
COL3A1P02461 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL3A1P02461 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC7.83□□□□□ -1.16
COL3A1P02461 CUBNP2-201ENST00000443534 1139 ntBASIC7.83□□□□□ -1.16
COL3A1P02461 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.83□□□□□ -1.16
COL3A1P02461 ACA64.4-201ENST00000459070 127 ntBASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms