Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
SHOX2O60902 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 SNORA43.1-201ENST00000364863 140 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 RNU6-316P-201ENST00000391027 107 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 SNORA11D-201ENST00000408548 128 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 SNORA11E-201ENST00000408778 128 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.1□□□□□ -1.43
SHOX2O60902 ETF1P1-206ENST00000427296 984 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 NPM1P19-201ENST00000450070 712 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 RPL5P15-201ENST00000475870 897 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 AC021820.1-201ENST00000525564 808 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.1□□□□□ -1.43
SHOX2O60902 PDCL3P1-201ENST00000534575 734 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC6.1□□□□□ -1.43
SHOX2O60902 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 AL512430.4-201ENST00000603085 613 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 NDUFB9P1-201ENST00000604683 510 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 AL133481.2-203ENST00000607558 139 ntBASIC6.1□□□□□ -1.43
SHOX2O60902 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.1□□□□□ -1.43
SHOX2O60902 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
SHOX2O60902 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.1□□□□□ -1.43
SHOX2O60902 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHOX2O60902 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.1□□□□□ -1.43
SHOX2O60902 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.09□□□□□ -1.43
SHOX2O60902 HSPA8P14-201ENST00000552265 1805 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
SHOX2O60902 RNA5SP382-201ENST00000363355 112 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SHOX2O60902 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 RN7SKP281-201ENST00000410472 352 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 RN7SKP30-201ENST00000411373 334 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 AL662791.3-201ENST00000413771 776 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 NMD3P2-201ENST00000421815 761 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 CENPN-204ENST00000428963 971 ntTSL 2 BASIC6.09□□□□□ -1.43
SHOX2O60902 AC108479.1-201ENST00000431142 427 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 AK3P5-201ENST00000432033 519 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC6.09□□□□□ -1.43
SHOX2O60902 MORF4-201ENST00000447135 971 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.09□□□□□ -1.43
SHOX2O60902 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC6.09□□□□□ -1.43
SHOX2O60902 RPL23AP40-201ENST00000487630 390 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC6.09□□□□□ -1.43
SHOX2O60902 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SHOX2O60902 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.09□□□□□ -1.43
SHOX2O60902 SEPT10P1-201ENST00000517342 1162 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
SHOX2O60902 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC6.09□□□□□ -1.43
SHOX2O60902 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC6.09□□□□□ -1.43
SHOX2O60902 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.09□□□□□ -1.43
SHOX2O60902 MIR5682-201ENST00000584864 76 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 AC008507.3-201ENST00000585753 472 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.09□□□□□ -1.43
SHOX2O60902 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.09□□□□□ -1.43
SHOX2O60902 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.09□□□□□ -1.43
SHOX2O60902 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC6.09□□□□□ -1.43
SHOX2O60902 AC007347.2-201ENST00000623044 180 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 AC005858.3-201ENST00000624756 589 ntBASIC6.09□□□□□ -1.43
SHOX2O60902 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.09□□□□□ -1.43
SHOX2O60902 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.09□□□□□ -1.43
SHOX2O60902 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHOX2O60902 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.09□□□□□ -1.44
SHOX2O60902 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SHOX2O60902 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
SHOX2O60902 EEF1A1P16-201ENST00000325349 1414 ntBASIC6.08□□□□□ -1.44
SHOX2O60902 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHOX2O60902 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.08□□□□□ -1.44
SHOX2O60902 AC015689.2-201ENST00000528172 1738 ntBASIC6.08□□□□□ -1.44
SHOX2O60902 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHOX2O60902 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.08□□□□□ -1.44
SHOX2O60902 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SHOX2O60902 AC121334.1-201ENST00000396414 802 ntBASIC6.08□□□□□ -1.44
SHOX2O60902 RN7SKP221-201ENST00000410420 301 ntBASIC6.08□□□□□ -1.44
SHOX2O60902 MEAF6P1-201ENST00000416092 327 ntBASIC6.08□□□□□ -1.44
SHOX2O60902 DPPA2P2-201ENST00000418220 897 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms